BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0655600 Os02g0655600|AK101560
         (138 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51180.1  | chr5:20797360-20799929 FORWARD LENGTH=358           91   1e-19
AT4G25770.1  | chr4:13117821-13119982 REVERSE LENGTH=419           90   3e-19
AT1G10040.1  | chr1:3276108-3278464 REVERSE LENGTH=413             72   8e-14
AT1G29120.5  | chr1:10174481-10178143 FORWARD LENGTH=457           56   6e-09

>AT5G51180.1 | chr5:20797360-20799929 FORWARD LENGTH=358
          Length = 357

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 48/59 (81%)

Query: 31 DHLVVMVHGIVGSAADWKFGAEQFEKLLSDKVIVHRSNRNMYKLTLDGVDVMGERLAQE 89
          DHLVVMVHGI+GS  DWKFGAEQF K + DKV VH S +N+  LTLDGVDVMGERLA E
Sbjct: 34 DHLVVMVHGILGSTDDWKFGAEQFVKKMPDKVFVHCSEKNVSALTLDGVDVMGERLAAE 92



>AT4G25770.1 | chr4:13117821-13119982 REVERSE LENGTH=419
          Length = 418

 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 46/59 (77%)

Query: 31  DHLVVMVHGIVGSAADWKFGAEQFEKLLSDKVIVHRSNRNMYKLTLDGVDVMGERLAQE 89
           DHLVVMV+GIVGSAADWK+ AEQF K   DKV+VHRS  N   LT DGVD MGERLA E
Sbjct: 92  DHLVVMVNGIVGSAADWKYAAEQFVKKFPDKVLVHRSESNSATLTFDGVDKMGERLANE 150



>AT1G10040.1 | chr1:3276108-3278464 REVERSE LENGTH=413
          Length = 412

 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 46/65 (70%)

Query: 32  HLVVMVHGIVGSAADWKFGAEQFEKLLSDKVIVHRSNRNMYKLTLDGVDVMGERLAQEKG 91
           HLVVMV+G++GSA +W+F A+Q  K     ++VH S RN    T DGVDVMGERLA+E  
Sbjct: 81  HLVVMVNGLIGSAQNWRFAAKQMLKKYPQDLLVHCSKRNHSTQTFDGVDVMGERLAEEVR 140

Query: 92  RLLKK 96
            ++K+
Sbjct: 141 SVIKR 145



>AT1G29120.5 | chr1:10174481-10178143 FORWARD LENGTH=457
          Length = 456

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 44/66 (66%)

Query: 31  DHLVVMVHGIVGSAADWKFGAEQFEKLLSDKVIVHRSNRNMYKLTLDGVDVMGERLAQEK 90
           DHL+V+VHGI+ S +DW +   + ++ L  + +++ S+ N +  T  G+D  G+RLA+E 
Sbjct: 101 DHLLVLVHGILASPSDWLYVEAELKRRLGRRFLIYASSSNTFTKTFGGIDGAGKRLAEEV 160

Query: 91  GRLLKK 96
            ++++K
Sbjct: 161 RQVVQK 166



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,384,803
Number of extensions: 83958
Number of successful extensions: 212
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 4
Length of query: 138
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 50
Effective length of database: 8,693,961
Effective search space: 434698050
Effective search space used: 434698050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)