BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0434100 Os08g0434100|AB052842
(229 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0434100 Similar to S-like ribonuclease (RNase PD2) (Fr... 427 e-120
Os07g0630400 Ribonuclease T2 family protein 189 1e-48
Os09g0537700 Ribonuclease T2 family protein 145 2e-35
Os07g0629900 138 3e-33
Os07g0629300 131 5e-31
Os09g0538000 Ribonuclease T2 family protein 125 3e-29
Os01g0897200 Similar to Ribonuclease 2 precursor (EC 3.1.27.1) 120 1e-27
Os01g0897300 Ribonuclease T2 family protein 110 1e-24
>Os08g0434100 Similar to S-like ribonuclease (RNase PD2) (Fragment)
Length = 229
Score = 427 bits (1098), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 25 QDYDFFFLVLQWPGSYCDTKQSCCYPRSGKPAADFGIHGLWPNRDDGSYPQNCDPDSEFD 84
QDYDFFFLVLQWPGSYCDTKQSCCYPRSGKPAADFGIHGLWPNRDDGSYPQNCDPDSEFD
Sbjct: 25 QDYDFFFLVLQWPGSYCDTKQSCCYPRSGKPAADFGIHGLWPNRDDGSYPQNCDPDSEFD 84
Query: 85 PSKVSDLLGSMRSEWPTLACPSNDGIRFWAHEWEKHGTCAAAALGDEHGYFEAALRLRSR 144
PSKVSDLLGSMRSEWPTLACPSNDGIRFWAHEWEKHGTCAAAALGDEHGYFEAALRLRSR
Sbjct: 85 PSKVSDLLGSMRSEWPTLACPSNDGIRFWAHEWEKHGTCAAAALGDEHGYFEAALRLRSR 144
Query: 145 LPVLAALRDGGVSPDGGYYTLSQIKGAIQRGVGAEPFVECNRDESGNSQLYQLYFCVDAA 204
LPVLAALRDGGVSPDGGYYTLSQIKGAIQRGVGAEPFVECNRDESGNSQLYQLYFCVDAA
Sbjct: 145 LPVLAALRDGGVSPDGGYYTLSQIKGAIQRGVGAEPFVECNRDESGNSQLYQLYFCVDAA 204
Query: 205 GERFVDCPASPGGRPCGNRIEFPAF 229
GERFVDCPASPGGRPCGNRIEFPAF
Sbjct: 205 GERFVDCPASPGGRPCGNRIEFPAF 229
>Os07g0630400 Ribonuclease T2 family protein
Length = 256
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 135/239 (56%), Gaps = 39/239 (16%)
Query: 26 DYDFFFLVLQWPGSYCDTKQSCCYPRSGKPAADFGIHGLWPN------------------ 67
++DFF+LV QWPGS+CDT+ CC+P +GKPAA+FGIHGLWPN
Sbjct: 22 EFDFFYLVQQWPGSFCDTQAGCCFPDTGKPAAEFGIHGLWPNYAKCRPAAGAVADDDDGV 81
Query: 68 ----------------RDDGSYPQNCDPDSEFDPSKVSDLLGSMRSEWPTLACPSNDGIR 111
R +P+ CD ++ P ++ DL+ + + WPTL+C
Sbjct: 82 VEMVVDGGAAVERHHRRRQKCWPEYCDDGNKLRPWEIKDLVAELDANWPTLSCKGGKSFE 141
Query: 112 FWAHEWEKHGTCAAAALGDEHGYFEAALRLRSRLPVLAALRDGGVSP-DGGYYTLSQIKG 170
FW++EW+KHGTC+ +HGYF AAL L+ R + A L G+ P D Y+L I+
Sbjct: 142 FWSYEWKKHGTCSGMG---QHGYFAAALELKKRHDLAAVLAGAGIVPSDDESYSLGSIRD 198
Query: 171 AIQRGVGAEPFVECNRDESGNSQLYQLYFCVDAAGERFVDCPASPGGRPCGNRIEFPAF 229
AI GA P +ECNRD +G +QL+Q+Y CVD +G++ VDC G+ C ++++ P F
Sbjct: 199 AIAAATGAVPNLECNRDAAGETQLFQVYQCVDRSGKKLVDCQLPMQGK-CRDKVKLPTF 256
>Os09g0537700 Ribonuclease T2 family protein
Length = 252
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 5/192 (2%)
Query: 27 YDFFFLVLQWPGSYC-DTKQSCCYPRSGKPAADFGIHGLWP-NRDDGSYPQNCDPDSEFD 84
+DF++L+L WPG+YC D++ CC P+ G P+ DF + + + + C+ D+ FD
Sbjct: 30 FDFYYLILMWPGAYCTDSEYGCCVPKYGYPSEDFFVKSFMTFDSSENTAVVRCNSDNPFD 89
Query: 85 PSKVSDLLGSMRSEWPTLACPSNDGIRFWAHEWEKHGTCAAAALGDEHGYFEAALRLRSR 144
+K+ + ++ W + CP DG+ W EW +G C+ E YF+A L+LR
Sbjct: 90 INKLDSIENNLNHYWSNIKCPRTDGVNSWKSEWNSYGVCSGLK---ELDYFKAGLQLRKN 146
Query: 145 LPVLAALRDGGVSPDGGYYTLSQIKGAIQRGVGAEPFVECNRDESGNSQLYQLYFCVDAA 204
VL+AL + G+ PD Y + IK A+ + +G P V+C G QLY++Y CVD
Sbjct: 147 ADVLSALAEQGIKPDYQLYNTAFIKWAVNQKLGVTPGVQCRDGPFGKKQLYEIYLCVDKD 206
Query: 205 GERFVDCPASPG 216
+ F+DCP P
Sbjct: 207 AKSFIDCPVLPN 218
>Os07g0629900
Length = 260
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 111/194 (57%), Gaps = 14/194 (7%)
Query: 25 QDYDFFFLVLQWPGSYCDTKQSCCYPRSGKPAADFGIHGLWPNR----DDGSYPQNCDPD 80
+++DF +L QWP SYC T + P P + F IHGLWP+ D + ++C+ +
Sbjct: 25 EEFDFMYLAQQWPDSYCSTHKCLVKP---PPPSHFTIHGLWPSYNKLIDGKMWLEDCNKE 81
Query: 81 SEFDPSKVSDLLGSMRSEWPTLACPSNDGIRFWAHEWEKHGTCAAAALGDEHGYFEAALR 140
DP+++ DL + +WP+L + FW+ EW+KHGTC+ LG +H YFEAAL
Sbjct: 82 DPLDPTQIQDLEKQLDQKWPSL---KQTNLEFWSLEWKKHGTCSN--LG-QHAYFEAALA 135
Query: 141 LRSRLPVLAALRDGGVSP-DGGYYTLSQIKGAIQRGVGAEPFVECNRDESGNSQLYQLYF 199
L + L DGGV P D YT +I A+ RG G + +C+++++G++ L ++
Sbjct: 136 LERLTNLTKILADGGVGPSDVKTYTFREISDALARGTGFRTYFKCSKNKAGDTLLSEVRQ 195
Query: 200 CVDAAGERFVDCPA 213
CVD GE+ ++C A
Sbjct: 196 CVDRYGEKLINCTA 209
>Os07g0629300
Length = 238
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 114/210 (54%), Gaps = 12/210 (5%)
Query: 27 YDFFFLVLQWPGSYCDTKQSCCYPRSGKPAADFGIHGLWPNRDDGSYPQNCDPDSEFDPS 86
+DF + V QW SYC T C P +F I GLWP+ ++ P+ C+ DP
Sbjct: 30 FDFMYFVQQWAPSYCSTAPHECEYEPRLPPNNFTIRGLWPSYEEWR-PEYCNISDRLDPG 88
Query: 87 KVSDLLGSMRSEWPTLACPSNDGIRFWAHEWEKHGTCAAAALGDEHGYFEAALRL-RSRL 145
++ DL+ + WP+L + + W+HEW KHGTC+ + +HGYF AAL L + +L
Sbjct: 89 QIQDLVKPLNQSWPSL-LRNETNLELWSHEWSKHGTCSNLS---QHGYFAAALALDKLKL 144
Query: 146 PVLAA-LRDGGVSP-DGGYYTLSQIKGAIQRGVGAEPFVECNRDE--SGNSQLYQLYFCV 201
L L DGGV P D YTL +I A+ +G G ++ C+++E G + LY++ CV
Sbjct: 145 TNLTKILADGGVVPSDEKTYTLGEISDALAKGTGFSTYLRCSQNELKYGETLLYEVLQCV 204
Query: 202 DAAGERFVDCPASPGGRPC--GNRIEFPAF 229
D +GE+ V+C C ++I+ PA+
Sbjct: 205 DRSGEKLVNCTTPYWVTRCLDPDKIKIPAW 234
>Os09g0538000 Ribonuclease T2 family protein
Length = 251
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 106/205 (51%), Gaps = 12/205 (5%)
Query: 26 DYDFFFLVLQWPGSYC-DTKQSCCYPRSGKPAADFGIHGLWPNRDDGSYPQNCDPDSEFD 84
D F+ + WPG+YC TK CC P++ A F ++ N S +C ++ FD
Sbjct: 29 DKIFYQITFMWPGAYCAQTKAGCCMPKTD--VAGFTVY----NATTNSSLSSCS-NTPFD 81
Query: 85 PSKVSDLLGSMRSEWPTLACPSNDGIRFWAHEWEKHGTCAAAALGDEHGYFEAALRLRSR 144
+++ D+ M+ W + CPS G + W + WE G C+ E YF+ AL LR +
Sbjct: 82 MNQIGDVTRLMQ-YWNNIRCPSKSGQKGWKNAWETSGVCSDLT---ESAYFDTALALRDK 137
Query: 145 LPVLAALRDGGVSPDGGYYTLSQIKGAIQRGVGAEPFVECNRDESGNSQLYQLYFCVDAA 204
+ L+ L G+ PD G Y++ +IK I+ G+GA ++C++ QLYQ+Y CV
Sbjct: 138 INPLSRLVSNGIKPDFGLYSVKKIKEVIEEGIGAPALIQCSKGPFNKFQLYQIYVCVAED 197
Query: 205 GERFVDCPASPGGRPCGNRIEFPAF 229
+ FV+CP+ CG+ I F F
Sbjct: 198 AKTFVECPSPRKPYTCGDDILFHPF 222
>Os01g0897200 Similar to Ribonuclease 2 precursor (EC 3.1.27.1)
Length = 284
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 92/171 (53%), Gaps = 10/171 (5%)
Query: 25 QDYDFFFLVLQWPGSYCDTKQSCCYPR---SGKPAADFGIHGLWPNRDDGSYPQNCDPDS 81
+++D+F L LQWPG+ C + + CC +P F IHGLWP+ DDG++P C S
Sbjct: 45 REFDYFALALQWPGTICASTRHCCAINGCCRSEPLQTFTIHGLWPDYDDGTWPACCRHTS 104
Query: 82 EFDPSKVSDLLGSMRSEWPTLACPSNDGIR-----FWAHEWEKHGTCAAAALGDEHGYFE 136
FD K+ L ++ WP+L C S+ FWAHE EKHGTC++ + DE YF
Sbjct: 105 -FDMDKILPLKPTLEKYWPSLYCSSSSTCFSGKGPFWAHESEKHGTCSSPVVKDELEYFT 163
Query: 137 AALRLRSRLPVLAALRDGGVS-PDGGYYTLSQIKGAIQRGVGAEPFVECNR 186
AL L + V L GG+ +G Y L+ + AI+ GA P + C +
Sbjct: 164 TALDLYFKYNVTEMLASGGIHVSNGKQYALTDVIDAIKCAFGASPQIVCKK 214
>Os01g0897300 Ribonuclease T2 family protein
Length = 271
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 93/199 (46%), Gaps = 27/199 (13%)
Query: 27 YDFFFLVLQWPGSYCDTKQSCCYPR---SGKPAADFGIHGLWPNRDDGSYPQNCDPDSEF 83
+D++ L LQWPG+ C CC P F IHGLWP G +P C P + F
Sbjct: 25 FDYYVLALQWPGTVCRQTSHCCSSNGCCRSHPLKFFTIHGLWPQYSYGGWPSCCRPTT-F 83
Query: 84 DPSKV--------------SDLLGSMRSEWPTLACPSND----GIR-FWAHEWEKHGTCA 124
D +KV S L + WP+L C S G R FW HEWE HGTC
Sbjct: 84 DGNKVAANHPSYLQNGILISRLKTILEEYWPSLYCGSFSTCFGGKRPFWVHEWETHGTCG 143
Query: 125 AAALGDEHGYFEAALRLRSRLPVLAALRDGGVSPDGG-YYTLSQIKGAIQRGVGAEPFVE 183
+ DE+ YF AL L S+ V AL+ + P GG Y + I AI+ GA P +
Sbjct: 144 YPEIQDEYDYFSTALYLYSKYNVTKALKKAHIYPRGGRKYLVGHIVSAIEFSFGAMPSIV 203
Query: 184 CNRDESGNSQLYQLYFCVD 202
C ++G+ Q +L F D
Sbjct: 204 C---KNGSVQELRLCFHKD 219
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.140 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,992,874
Number of extensions: 432031
Number of successful extensions: 794
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 770
Number of HSP's successfully gapped: 9
Length of query: 229
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 132
Effective length of database: 11,971,043
Effective search space: 1580177676
Effective search space used: 1580177676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)