Os01g0897200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribonuclease 2 precursor (EC 3.1.27.1).
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Os01g0897200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribonuclease 2 precursor (EC 3.1.27.1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.21 | 0.279 | 12.6 | -0.83 | 1.08 | -0.377 | 0.423 | -2.09 | -0.0937 | 0.0322 | 1.274 | 4342 | -- | -- |
| 39.09 | 0.293 | 12.6 | -0.395 | 0.842 | -0.277 | 0.412 | -- | -0.0713 | 23.9 | 16.3 | 2937 | -- | -- |
| 35.07 | 0.276 | 12.6 | -0.788 | 1.06 | -0.347 | -- | -2.26 | -0.0879 | 23.9 | 1.505 | 4460 | -- | -- |
| 39.81 | 0.296 | 12.6 | -0.41 | 0.83 | -0.289 | -- | -- | -0.0734 | 23.8 | 16.3 | 2937 | -- | -- |
| 51.17 | 0.335 | 12.5 | -0.394 | -- | -0.757 | -- | -0.219 | -0.0166 | -- | 1.903 | 4706 | -- | -- |
| 42.1 | 0.304 | 12.6 | -0.409 | 1.08 | -- | 0.482 | -- | -0.0598 | 24 | -- | -- | -- | -- |
| 43.11 | 0.307 | 12.6 | -0.428 | 1.08 | -- | -- | -- | -0.0618 | 24 | -- | -- | -- | -- |
| 51.35 | 0.335 | 12.5 | -0.394 | -- | -0.761 | -- | -- | -0.0141 | -- | 2.099 | 4658 | -- | -- |
| 44.04 | 0.309 | 12.5 | -- | 1.09 | -0.247 | -- | -- | 0.0148 | 23.8 | 40.06 | 2308 | -- | -- |
| 116.43 | 0.504 | 12.5 | -0.394 | -- | -- | -- | -- | -0.0471 | -- | -- | -- | -- | -- |
| 47.92 | 0.324 | 12.5 | -- | 1.07 | -- | -- | -- | -0.0142 | 23.9 | -- | -- | -- | -- |
| 55.44 | 0.348 | 12.5 | -- | -- | -0.761 | -- | -- | 0.0296 | -- | 2.099 | 4658 | -- | -- |
| 120.54 | 0.512 | 12.5 | -- | -- | -- | -- | -- | -0.00337 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.14 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 2 | 34.16 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 3 | 34.17 | wind | 1.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 5 | 34.31 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 8 | 34.39 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 11 | 34.45 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 14 | 34.50 | wind | 1.0 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 17 | 34.51 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 19 | 34.52 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 20 | 34.52 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 3 | 14 |
| 23 | 34.53 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 5 | 12 |
| 24 | 34.53 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 4 | 13 |
| 38 | 34.54 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 19 | 22 |
| 45 | 34.56 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 49 | 34.57 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 17 |
| 54 | 34.59 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 55 | 34.59 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 58 | 34.60 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 59 | 34.60 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 19 | 10 |
| 62 | 34.61 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 19 | 8 |
| 71 | 34.64 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 17 |
| 81 | 34.66 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 7 |
| 119 | 34.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 127 | 34.73 | radiation | 1.0 | 4320 | < th | dose independent | sin | 4 | NA |
| 128 | 34.73 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 130 | 34.73 | wind | 1.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 138 | 34.73 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 12 |
| 140 | 34.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 160 | 34.76 | radiation | 1.0 | 4320 | > th | dose independent | sin | 4 | NA |
| 161 | 34.76 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 172 | 34.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 173 | 34.77 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 174 | 34.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 199 | 34.78 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 220 | 34.79 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 20 | 21 |
| 247 | 34.81 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 5 |
| 262 | 34.82 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 6 | NA |
| 282 | 34.83 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 292 | 34.83 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 8 |
| 311 | 34.84 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 315 | 34.84 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 327 | 34.84 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 1 | 12 |
| 333 | 34.84 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 17 |
| 337 | 34.85 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 6 | NA |
| 338 | 34.85 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 4 | NA |
| 340 | 34.85 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 374 | 34.86 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 395 | 34.86 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 24 | 13 |
| 443 | 34.88 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 474 | 34.89 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 480 | 34.89 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 481 | 34.89 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 507 | 34.90 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 580 | 34.92 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 4 | 9 |
| 620 | 34.93 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 623 | 34.93 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 24 | 3 |
| 683 | 34.94 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 715 | 34.94 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 14 | 17 |
| 720 | 34.95 | humidity | 90.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 721 | 34.95 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 762 | 34.96 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 764 | 34.96 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 768 | 34.96 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 5 | 8 |
| 823 | 34.97 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 7 |
| 883 | 34.98 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 924 | 34.99 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 5 | 6 |