BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0897200 Os01g0897200|AK100403
(284 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G39780.1 | chr2:16591256-16593515 FORWARD LENGTH=260 247 6e-66
AT1G14220.1 | chr1:4858642-4859601 REVERSE LENGTH=229 124 4e-29
AT2G02990.1 | chr2:873714-874667 FORWARD LENGTH=231 122 2e-28
AT1G14210.1 | chr1:4856902-4857941 REVERSE LENGTH=248 107 1e-23
AT1G26820.1 | chr1:9292760-9293722 REVERSE LENGTH=223 106 1e-23
>AT2G39780.1 | chr2:16591256-16593515 FORWARD LENGTH=260
Length = 259
Score = 247 bits (630), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 150/221 (67%), Gaps = 5/221 (2%)
Query: 42 KKQREFDYFALALQWPGTICASTRHCCAINGCCR-SEPLQTFTIHGLWPDYDDGTWPACC 100
+ QREFDYFAL+LQWPGT C TRHCC+ N CCR S+ FTIHGLWPDY+DG+WP+CC
Sbjct: 27 RSQREFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPTQFTIHGLWPDYNDGSWPSCC 86
Query: 101 RHTSFDMDKILPLKPTLEKYWPXXXXXXXXXXXXGKGPFWAHESEKHGTCSSPVVKDELE 160
+ F +I L LEKYWP GKG FW HE EKHGTCSSPV DE
Sbjct: 87 YRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYN 146
Query: 161 YFTTALDLYFKYNVTEMLASGGIHVSNGKQYALTDVIDAIKCAFGASPQIVCKKGSVEEL 220
YF T L+LY K+NVT++L G SN ++Y L ++ AI+ AF +P++VCK+ +++E+
Sbjct: 147 YFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVCKRDAIDEI 206
Query: 221 RLCFDKDLKPLDCLTTTATNENVSKKKYCPRYITLPTYDPI 261
R+CF KD KP DC+ + ++++ +K CP+Y++LP Y P+
Sbjct: 207 RICFYKDFKPRDCVGS----QDLTSRKSCPKYVSLPEYTPL 243
>AT1G14220.1 | chr1:4858642-4859601 REVERSE LENGTH=229
Length = 228
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 100/190 (52%), Gaps = 16/190 (8%)
Query: 42 KKQREFDYFALALQWPGTICASTRHCCAINGCCRSEPLQTFTIHGLWPDYDDGTWPACCR 101
+ Q +FD+F LQWPG C ++R CC +P F IHGLWP+Y+ G+WP+ C
Sbjct: 23 RPQEDFDFFYFVLQWPGAYCDTSRACCYPT---SGKPAADFGIHGLWPNYNGGSWPSNCD 79
Query: 102 -HTSFDMDKILPLKPTLEKYWPXXXXXXXXXXXXGKGPFWAHESEKHGTCSSPVVKDELE 160
+ FD +I L +L+K WP FW HE EKHGTCS V+ D+ E
Sbjct: 80 PDSQFDRSQISDLVSSLKKNWPTLSCPSNEGFN-----FWEHEWEKHGTCSESVM-DQHE 133
Query: 161 YFTTALDLYFKYNVTEMLASGGIHVSNGKQYALTDVIDAIKCAFGASPQIVCKK-----G 215
YF AL L K N+ ++L + GI+ +G Y L + +AIK G +P I C K
Sbjct: 134 YFENALKLKQKANLLQILKNSGINPDDGF-YNLDKITNAIKDGIGFTPGIECNKDPERNA 192
Query: 216 SVEELRLCFD 225
+ ++ +C D
Sbjct: 193 QLHQIYICVD 202
>AT2G02990.1 | chr2:873714-874667 FORWARD LENGTH=231
Length = 230
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 102/189 (53%), Gaps = 18/189 (9%)
Query: 45 REFDYFALALQWPGTICASTRHCCAINGCCRSEPLQTFTIHGLWPDYDDGTWPACCRHTS 104
+FD+F QWPG+ C + + CC N +P F IHGLWP+Y DGT+P+ C +
Sbjct: 28 EDFDFFYFVQQWPGSYCDTQKKCCYPN---SGKPAADFGIHGLWPNYKDGTYPSNCDASK 84
Query: 105 -FDMDKILPLKPTLEKYWPXXXXXXXXXXXXGKG-PFWAHESEKHGTCSSPVVKDELEYF 162
FD I L +++K WP G G FW HE EKHGTCS V+ D+ EYF
Sbjct: 85 PFDSSTISDLLTSMKKSWP------TLACPSGSGEAFWEHEWEKHGTCSESVI-DQHEYF 137
Query: 163 TTALDLYFKYNVTEMLASGGIHVSNGKQYALTDVIDAIKCAFGASPQIVCKK-----GSV 217
TAL+L K N+ L GI+ +GK Y+L + D+IK + G +P + C + +
Sbjct: 138 QTALNLKQKTNLLGALTKAGIN-PDGKSYSLESIRDSIKESIGFTPWVECNRDGSGNSQL 196
Query: 218 EELRLCFDK 226
++ LC D+
Sbjct: 197 YQVYLCVDR 205
>AT1G14210.1 | chr1:4856902-4857941 REVERSE LENGTH=248
Length = 247
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 96/191 (50%), Gaps = 14/191 (7%)
Query: 42 KKQREFDYFALALQWPGTICASTRHCCAINGCCRSEPLQTFTIHGLWPDYDDGTWPACCR 101
+ + +F++F WPG IC S + CC + F IHGLWP +++GTWPA C
Sbjct: 21 QTEPDFNFFYWVNYWPGAICDSQKGCCPPT---KGNTASDFIIHGLWPQFNNGTWPAFCD 77
Query: 102 HTS-FDMDKILPLKPTLEKYWPXXXXXXXXXXXXGKGPFWAHESEKHGTCSSPVVKDELE 160
T+ FD+ KI L +EK W + W HE KHGTC + D+
Sbjct: 78 QTNLFDISKISDLVCQMEKKW---TEWGVWACPSNETNLWEHEWNKHGTCVQSIF-DQHS 133
Query: 161 YFTTALDLYFKYNVTEMLASGGIHVSNGKQYALTDVIDAIKCAFGASPQIVCK---KGSV 217
YF T L K ++ +L GI ++G Y+L ++ +AIKCA G +P I C KG+
Sbjct: 134 YFRTNLKFKHKVHLLNILIQKGIKPNDGF-YSLDEIKNAIKCAIGFAPGIECNEDVKGNK 192
Query: 218 E--ELRLCFDK 226
+ ++ +C D
Sbjct: 193 QLFQIYICLDN 203
>AT1G26820.1 | chr1:9292760-9293722 REVERSE LENGTH=223
Length = 222
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 45 REFDYFALALQWPGTICASTRHCCAINGCCRSEPLQTFTIHGLWPDYDDGTWPACCRHTS 104
++FD+F LQWPG C S CC +P F IHGLWP+Y G WP C S
Sbjct: 20 QDFDFFYFVLQWPGAYCDSRHSCCYPQ---TGKPAADFGIHGLWPNYKTGGWPQNCNPDS 76
Query: 105 -FDMDKILPLKPTLEKYWPXXXXXXXXXXXXGKGPFWAHESEKHGTCSSPVVKDELEYFT 163
FD ++ L L++ WP FW HE EKHGTC+ + D+ +YF
Sbjct: 77 RFDDLRVSDLMSDLQREWPTLSCPSNDGMK-----FWTHEWEKHGTCAESEL-DQHDYFE 130
Query: 164 TALDLYFKYNVTEMLASGGIHVSNGKQYALTDVIDAIKCAFGASPQIVCKKGSVEELRL 222
L L K N+ L + GI + K Y + D+ + IK G +P I C K S +L
Sbjct: 131 AGLKLKQKANLLHALTNAGIK-PDDKFYEMKDIENTIKQVVGFAPGIECNKDSSHNSQL 188
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,750,783
Number of extensions: 229769
Number of successful extensions: 444
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 5
Length of query: 284
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 187
Effective length of database: 8,447,217
Effective search space: 1579629579
Effective search space used: 1579629579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)