Os01g0897300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribonuclease T2 family protein.
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Os01g0897300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribonuclease T2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 236.55 | 0.723 | 6.17 | -4.08 | 0.728 | 1.73 | 0.628 | -1.86 | -0.956 | 0.316 | 25.9 | 1229 | -- | -- |
| 237.43 | 0.718 | 6.12 | -3.64 | 0.729 | 1.55 | 0.54 | -- | -0.866 | 0.294 | 25.8 | 1221 | -- | -- |
| 238.09 | 0.719 | 6.16 | -4.03 | 0.723 | 1.72 | -- | -1.55 | -0.938 | 0.15 | 25.93 | 1224 | -- | -- |
| 238.59 | 0.719 | 6.12 | -3.66 | 0.723 | 1.57 | -- | -- | -0.86 | 0.0615 | 25.84 | 1221 | -- | -- |
| 261.24 | 0.753 | 6.18 | -4.12 | -- | 2.18 | -- | -1.69 | -1.09 | -- | 24.48 | 1086 | -- | -- |
| 328.58 | 0.85 | 6.09 | -3.14 | 1 | -- | 0.936 | -- | -0.751 | 0.558 | -- | -- | -- | -- |
| 332.2 | 0.854 | 6.09 | -3.17 | 1 | -- | -- | -- | -0.754 | 0.357 | -- | -- | -- | -- |
| 262.31 | 0.754 | 6.13 | -3.73 | -- | 2.03 | -- | -- | -0.997 | -- | 24.4 | 1083 | -- | -- |
| 554.4 | 1.1 | 5.98 | -- | 0.79 | 0.886 | -- | -- | -0.238 | 23.7 | 32.93 | 1037 | -- | -- |
| 395.15 | 0.929 | 6.07 | -3.14 | -- | -- | -- | -- | -0.738 | -- | -- | -- | -- | -- |
| 597.08 | 1.14 | 6.02 | -- | 0.956 | -- | -- | -- | -0.401 | 0.185 | -- | -- | -- | -- |
| 593.98 | 1.14 | 5.95 | -- | -- | 1.12 | -- | -- | -0.186 | -- | 33.1 | 1041 | -- | -- |
| 654.66 | 1.19 | 6 | -- | -- | -- | -- | -- | -0.39 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 236.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 3 | 237.55 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 5 | 237.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 16 | 239.29 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 23 | 239.49 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 25 | 239.53 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 32 | 239.85 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 34 | 239.89 | radiation | 10 | 1440 | > th | dose independent | sin | 14 | NA |
| 35 | 239.89 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 41 | 240.05 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 79 | 240.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 90 | 240.82 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 93 | 240.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 152 | 241.95 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 164 | 242.10 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 203 | 242.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 220 | 242.67 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 238 | 242.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 12 |
| 296 | 243.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 330 | 243.45 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 333 | 243.46 | radiation | 10 | 1440 | < th | dose dependent | sin | 16 | NA |
| 342 | 243.52 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 422 | 243.90 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 21 |
| 555 | 244.41 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 602 | 244.84 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 621 | 244.99 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 698 | 245.45 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 763 | 245.86 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 9 |
| 933 | 247.09 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |