BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0897300 Os01g0897300|AK061032
(271 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G39780.1 | chr2:16591256-16593515 FORWARD LENGTH=260 229 8e-61
AT1G26820.1 | chr1:9292760-9293722 REVERSE LENGTH=223 112 2e-25
AT1G14220.1 | chr1:4858642-4859601 REVERSE LENGTH=229 112 2e-25
AT2G02990.1 | chr2:873714-874667 FORWARD LENGTH=231 110 6e-25
AT1G14210.1 | chr1:4856902-4857941 REVERSE LENGTH=248 86 3e-17
>AT2G39780.1 | chr2:16591256-16593515 FORWARD LENGTH=260
Length = 259
Score = 229 bits (585), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 148/254 (58%), Gaps = 26/254 (10%)
Query: 7 RLVISLSALCLAVAVMSG----------FDYYVLALQWPGTVCRQTSHCCSSNGCCR-SH 55
RL + L C+A A FDY+ L+LQWPGT CR T HCCS N CCR S
Sbjct: 4 RLCLLLLVACIAGAFAGDVIELNRSQREFDYFALSLQWPGTYCRGTRHCCSKNACCRGSD 63
Query: 56 PLKFFTIHGLWPQYSYGGWPSCCRPTTFDGNKVAANHPSYLQNGILISRLKTILEEYWPS 115
FTIHGLWP Y+ G WPSCC + F + IS L LE+YWPS
Sbjct: 64 APTQFTIHGLWPDYNDGSWPSCCYRSDFKEKE--------------ISTLMDGLEKYWPS 109
Query: 116 LYCGSFSTCFGGKRPFWVHEWETHGTCGYPEIQDEYDYFSTALYLYSKYNVTKALKKAHI 175
L CGS S+C GGK FW HEWE HGTC P DEY+YF T L LY K+NVT L +A
Sbjct: 110 LSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGY 169
Query: 176 YPRGGRKYLVGHIVSAIEFSFGAMPSIVCKNGSVQELRLCFHKDYQPRDCLVEGENSVRR 235
KY +G IV+AI+ +F P +VCK ++ E+R+CF+KD++PRDC V ++ R
Sbjct: 170 VASNSEKYPLGGIVTAIQNAFHITPEVVCKRDAIDEIRICFYKDFKPRDC-VGSQDLTSR 228
Query: 236 NHCPRYVTLPSYKP 249
CP+YV+LP Y P
Sbjct: 229 KSCPKYVSLPEYTP 242
>AT1G26820.1 | chr1:9292760-9293722 REVERSE LENGTH=223
Length = 222
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 8 LVISLSALCLAVAVMSGFDYYVLALQWPGTVCRQTSHCCSSNGCCRSHPLKFFTIHGLWP 67
+++L L + + FD++ LQWPG C CC P F IHGLWP
Sbjct: 6 FILALQQLYVQ-SFAQDFDFFYFVLQWPGAYCDSRHSCCYPQ---TGKPAADFGIHGLWP 61
Query: 68 QYSYGGWPSCCRPTT-FDGNKVAANHPSYLQNGILISRLKTILEEYWPSLYCGSFSTCFG 126
Y GGWP C P + FD + +S L + L+ WP+L C S
Sbjct: 62 NYKTGGWPQNCNPDSRFD--------------DLRVSDLMSDLQREWPTLSCPS-----N 102
Query: 127 GKRPFWVHEWETHGTCGYPEIQDEYDYFSTALYLYSKYNVTKALKKAHIYPRGGRKYLVG 186
FW HEWE HGTC E+ D++DYF L L K N+ AL A I P + Y +
Sbjct: 103 DGMKFWTHEWEKHGTCAESEL-DQHDYFEAGLKLKQKANLLHALTNAGIKP-DDKFYEMK 160
Query: 187 HIVSAIEFSFGAMPSIVCKNGSVQELRL 214
I + I+ G P I C S +L
Sbjct: 161 DIENTIKQVVGFAPGIECNKDSSHNSQL 188
>AT1G14220.1 | chr1:4858642-4859601 REVERSE LENGTH=229
Length = 228
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 97/197 (49%), Gaps = 30/197 (15%)
Query: 25 FDYYVLALQWPGTVCRQTSHCCSSNGCCRSHPLKFFTIHGLWPQYSYGGWPSCCRPTT-F 83
FD++ LQWPG C + CC P F IHGLWP Y+ G WPS C P + F
Sbjct: 28 FDFFYFVLQWPGAYCDTSRACCYPT---SGKPAADFGIHGLWPNYNGGSWPSNCDPDSQF 84
Query: 84 DGNKVAANHPSYLQNGILISRLKTILEEYWPSLYCGSFSTCFGGKRPFWVHEWETHGTCG 143
D ++ IS L + L++ WP+L C S + F FW HEWE HGTC
Sbjct: 85 DRSQ--------------ISDLVSSLKKNWPTLSCPS-NEGFN----FWEHEWEKHGTCS 125
Query: 144 YPEIQDEYDYFSTALYLYSKYNVTKALKKAHIYPRGGRKYLVGHIVSAIEFSFGAMPSIV 203
+ D+++YF AL L K N+ + LK + I P G Y + I +AI+ G P I
Sbjct: 126 -ESVMDQHEYFENALKLKQKANLLQILKNSGINPDDGF-YNLDKITNAIKDGIGFTPGIE 183
Query: 204 C-----KNGSVQELRLC 215
C +N + ++ +C
Sbjct: 184 CNKDPERNAQLHQIYIC 200
>AT2G02990.1 | chr2:873714-874667 FORWARD LENGTH=231
Length = 230
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 8 LVISLSALCLAVAVMSGFDYYVLALQWPGTVCRQTSHCCSSNGCCRSHPLKFFTIHGLWP 67
L++ L ++ A + FD++ QWPG+ C CC N P F IHGLWP
Sbjct: 13 LLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPN---SGKPAADFGIHGLWP 69
Query: 68 QYSYGGWPSCCRPTT-FDGNKVAANHPSYLQNGILISRLKTILEEYWPSLYCGSFSTCFG 126
Y G +PS C + FD + IS L T +++ WP+L C S G
Sbjct: 70 NYKDGTYPSNCDASKPFDSST--------------ISDLLTSMKKSWPTLACPS-----G 110
Query: 127 GKRPFWVHEWETHGTCGYPEIQDEYDYFSTALYLYSKYNVTKALKKAHIYPRGGRKYLVG 186
FW HEWE HGTC I D+++YF TAL L K N+ AL KA I P G+ Y +
Sbjct: 111 SGEAFWEHEWEKHGTCSESVI-DQHEYFQTALNLKQKTNLLGALTKAGINPD-GKSYSLE 168
Query: 187 HIVSAIEFSFGAMPSIVCK-----NGSVQELRLCFHK 218
I +I+ S G P + C N + ++ LC +
Sbjct: 169 SIRDSIKESIGFTPWVECNRDGSGNSQLYQVYLCVDR 205
>AT1G14210.1 | chr1:4856902-4857941 REVERSE LENGTH=248
Length = 247
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 7 RLVISLSALCLAVAVMSG------FDYYVLALQWPGTVCRQTSHCCSSNGCCRSHPLKFF 60
R +I +S L L V+S F+++ WPG +C CC + + F
Sbjct: 2 RGIIIVSLLILQSLVVSSSQTEPDFNFFYWVNYWPGAICDSQKGCCPPT---KGNTASDF 58
Query: 61 TIHGLWPQYSYGGWPSCCRPTT-FDGNKVAANHPSYLQNGILISRLKTILEEYWPSLYCG 119
IHGLWPQ++ G WP+ C T FD +K IS L +E+ W
Sbjct: 59 IIHGLWPQFNNGTWPAFCDQTNLFDISK--------------ISDLVCQMEKKWTEW--- 101
Query: 120 SFSTCFGGKRPFWVHEWETHGTCGYPEIQDEYDYFSTALYLYSKYNVTKALKKAHIYPRG 179
C + W HEW HGTC I D++ YF T L K ++ L + I P
Sbjct: 102 GVWACPSNETNLWEHEWNKHGTC-VQSIFDQHSYFRTNLKFKHKVHLLNILIQKGIKPND 160
Query: 180 GRKYLVGHIVSAIEFSFGAMPSIVC 204
G Y + I +AI+ + G P I C
Sbjct: 161 GF-YSLDEIKNAIKCAIGFAPGIEC 184
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,724,796
Number of extensions: 300479
Number of successful extensions: 540
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 5
Length of query: 271
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 174
Effective length of database: 8,447,217
Effective search space: 1469815758
Effective search space used: 1469815758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)