Os07g0630400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribonuclease T2 family protein.
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Os07g0630400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribonuclease T2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 291.27 | 0.802 | 3.48 | -1.94 | 0.803 | 0.667 | -1.79 | 2.53 | -0.176 | 7.84 | 1010 | 10243 | -- | -- |
| 306.44 | 0.815 | 3.43 | -1.03 | 0.861 | 0.708 | -2.08 | -- | -0.116 | 7.75 | 1009 | 9665 | -- | -- |
| 299.58 | 0.806 | 3.5 | -1.98 | 0.806 | 0.61 | -- | 2.46 | -0.2 | 7.92 | 1011 | 10371 | -- | -- |
| 316.36 | 0.828 | 3.44 | -1.03 | 0.804 | 0.745 | -- | -- | -0.0542 | 8 | 1009 | 9623 | -- | -- |
| 333.89 | 0.851 | 3.51 | -1.97 | -- | 0.61 | -- | 2.4 | -0.177 | -- | 1011 | 10455 | -- | -- |
| 325.56 | 0.846 | 3.45 | -1.27 | 0.783 | -- | -1.86 | -- | -0.179 | 7.94 | -- | -- | -- | -- |
| 335.57 | 0.858 | 3.44 | -1.32 | 0.781 | -- | -- | -- | -0.175 | 8.21 | -- | -- | -- | -- |
| 350.94 | 0.873 | 3.44 | -1.04 | -- | 0.729 | -- | -- | -0.0389 | -- | 1009 | 9578 | -- | -- |
| 340.87 | 0.86 | 3.37 | -- | 0.787 | 0.895 | -- | -- | 0.179 | 8.02 | 1013 | 10322 | -- | -- |
| 369.19 | 0.898 | 3.46 | -1.31 | -- | -- | -- | -- | -0.166 | -- | -- | -- | -- | -- |
| 381.3 | 0.913 | 3.41 | -- | 0.774 | -- | -- | -- | -0.0287 | 8.34 | -- | -- | -- | -- |
| 350.33 | 0.872 | 3.35 | -- | -- | 1.29 | -- | -- | 0.329 | -- | 1011 | 46621 | -- | -- |
| 414.56 | 0.95 | 3.43 | -- | -- | -- | -- | -- | -0.021 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 280.77 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 4 | 281.22 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 7 | 284.00 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 8 | 284.01 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 14 | 284.73 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 22 | 285.70 | radiation | 10 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 24 | 285.73 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 25 | 285.73 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 35 | 286.10 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 43 | 286.70 | humidity | 80 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 47 | 286.89 | radiation | 1 | 14400 | < th | dose dependent | rect. | 12 | 6 |
| 63 | 287.54 | humidity | 60 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 78 | 287.91 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 10 |
| 101 | 287.97 | radiation | 1 | 43200 | < th | dose dependent | sin | 19 | NA |
| 133 | 288.04 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 209 | 288.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 12 | 10 |
| 253 | 288.25 | radiation | 1 | 43200 | < th | dose independent | sin | 19 | NA |
| 262 | 288.26 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 316 | 288.33 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 367 | 288.42 | temperature | 20 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 369 | 288.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 15 | 16 |
| 386 | 288.47 | temperature | 30 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 432 | 288.59 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 435 | 288.59 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 437 | 288.59 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 440 | 288.60 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 472 | 288.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 473 | 288.67 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 477 | 288.68 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 480 | 288.69 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 493 | 288.70 | temperature | 30 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 514 | 288.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 573 | 288.84 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 579 | 288.84 | temperature | 30 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 602 | 288.87 | temperature | 15 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 631 | 288.90 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 632 | 288.90 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 677 | 288.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 683 | 288.95 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 686 | 288.95 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 694 | 288.95 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 17 |
| 715 | 288.97 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 22 |
| 758 | 288.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 19 |
| 772 | 289.00 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 824 | 289.03 | radiation | 1 | 43200 | > th | dose independent | sin | 19 | NA |
| 851 | 289.04 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 859 | 289.04 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 21 |
| 981 | 289.14 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |