BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0630400 Os07g0630400|AK060320
(256 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0630400 Ribonuclease T2 family protein 438 e-123
Os08g0434100 Similar to S-like ribonuclease (RNase PD2) (Fr... 189 2e-48
Os07g0629300 175 4e-44
Os07g0629900 171 6e-43
Os09g0537700 Ribonuclease T2 family protein 109 2e-24
Os01g0897200 Similar to Ribonuclease 2 precursor (EC 3.1.27.1) 96 3e-20
Os01g0897300 Ribonuclease T2 family protein 89 2e-18
Os09g0538000 Ribonuclease T2 family protein 73 2e-13
>Os07g0630400 Ribonuclease T2 family protein
Length = 256
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/236 (90%), Positives = 213/236 (90%)
Query: 21 DEFDFFYLVQQWPGSFCDTQAGCCFPDTGKPAAEFGIHGLWPNYAKCRPXXXXXXXXXXX 80
DEFDFFYLVQQWPGSFCDTQAGCCFPDTGKPAAEFGIHGLWPNYAKCRP
Sbjct: 21 DEFDFFYLVQQWPGSFCDTQAGCCFPDTGKPAAEFGIHGLWPNYAKCRPAAGAVADDDDG 80
Query: 81 XXXXXXXXXXXXERHHRRRQKCWPEYCDDGNKLRPWEIKDLVAELDANWPTLSCKGGKSF 140
ERHHRRRQKCWPEYCDDGNKLRPWEIKDLVAELDANWPTLSCKGGKSF
Sbjct: 81 VVEMVVDGGAAVERHHRRRQKCWPEYCDDGNKLRPWEIKDLVAELDANWPTLSCKGGKSF 140
Query: 141 EFWSYEWKKHGTCSGMGQHGYFAAALELKKRHDLAAVLAGAGIVPSDDESYSLGSIRDAI 200
EFWSYEWKKHGTCSGMGQHGYFAAALELKKRHDLAAVLAGAGIVPSDDESYSLGSIRDAI
Sbjct: 141 EFWSYEWKKHGTCSGMGQHGYFAAALELKKRHDLAAVLAGAGIVPSDDESYSLGSIRDAI 200
Query: 201 AAATGAVPNLECNRDAAGETQLFQVYQCVDRSGKKLVDCQLPMQGKCRDKVKLPTF 256
AAATGAVPNLECNRDAAGETQLFQVYQCVDRSGKKLVDCQLPMQGKCRDKVKLPTF
Sbjct: 201 AAATGAVPNLECNRDAAGETQLFQVYQCVDRSGKKLVDCQLPMQGKCRDKVKLPTF 256
>Os08g0434100 Similar to S-like ribonuclease (RNase PD2) (Fragment)
Length = 229
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 135/239 (56%), Gaps = 39/239 (16%)
Query: 22 EFDFFYLVQQWPGSFCDTQAGCCFPDTGKPAAEFGIHGLWPNYAKCRPXXXXXXXXXXXX 81
++DFF+LV QWPGS+CDT+ CC+P +GKPAA+FGIHGLWPN
Sbjct: 26 DYDFFFLVLQWPGSYCDTKQSCCYPRSGKPAADFGIHGLWPN------------------ 67
Query: 82 XXXXXXXXXXXERHHRRRQKCWPEYCDDGNKLRPWEIKDLVAELDANWPTLSCKGGKSFE 141
R +P+ CD ++ P ++ DL+ + + WPTL+C
Sbjct: 68 ----------------RDDGSYPQNCDPDSEFDPSKVSDLLGSMRSEWPTLACPSNDGIR 111
Query: 142 FWSYEWKKHGTCSGMG---QHGYFAAALELKKRHDLAAVLAGAGIVPSDDESYSLGSIRD 198
FW++EW+KHGTC+ +HGYF AAL L+ R + A L G+ P D Y+L I+
Sbjct: 112 FWAHEWEKHGTCAAAALGDEHGYFEAALRLRSRLPVLAALRDGGVSP-DGGYYTLSQIKG 170
Query: 199 AIAAATGAVPNLECNRDAAGETQLFQVYQCVDRSGKKLVDCQLPMQGK-CRDKVKLPTF 256
AI GA P +ECNRD +G +QL+Q+Y CVD +G++ VDC G+ C ++++ P F
Sbjct: 171 AIQRGVGAEPFVECNRDESGNSQLYQLYFCVDAAGERFVDCPASPGGRPCGNRIEFPAF 229
>Os07g0629300
Length = 238
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 133/240 (55%), Gaps = 43/240 (17%)
Query: 22 EFDFFYLVQQWPGSFCDTQAGCCFPDTGKPAAEFGIHGLWPNYAKCRPXXXXXXXXXXXX 81
+FDF Y VQQW S+C T C + P F I GLWP+Y + RP
Sbjct: 29 KFDFMYFVQQWAPSYCSTAPHECEYEPRLPPNNFTIRGLWPSYEEWRP------------ 76
Query: 82 XXXXXXXXXXXERHHRRRQKCWPEYCDDGNKLRPWEIKDLVAELDANWPTLSCKGGKSFE 141
EYC+ ++L P +I+DLV L+ +WP+L + + E
Sbjct: 77 -----------------------EYCNISDRLDPGQIQDLVKPLNQSWPSL-LRNETNLE 112
Query: 142 FWSYEWKKHGTCSGMGQHGYFAAALELKKRH--DLAAVLAGAGIVPSDDESYSLGSIRDA 199
WS+EW KHGTCS + QHGYFAAAL L K +L +LA G+VPSD+++Y+LG I DA
Sbjct: 113 LWSHEWSKHGTCSNLSQHGYFAAALALDKLKLTNLTKILADGGVVPSDEKTYTLGEISDA 172
Query: 200 IAAATGAVPNLECNRDAA--GETQLFQVYQCVDRSGKKLVDCQLPM-QGKCR--DKVKLP 254
+A TG L C+++ GET L++V QCVDRSG+KLV+C P +C DK+K+P
Sbjct: 173 LAKGTGFSTYLRCSQNELKYGETLLYEVLQCVDRSGEKLVNCTTPYWVTRCLDPDKIKIP 232
>Os07g0629900
Length = 260
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 126/236 (53%), Gaps = 38/236 (16%)
Query: 21 DEFDFFYLVQQWPGSFCDTQAGCCFPDTGKPAAEFGIHGLWPNYAKCRPXXXXXXXXXXX 80
+EFDF YL QQWP S+C T P P + F IHGLWP+Y K
Sbjct: 25 EEFDFMYLAQQWPDSYCSTHKCLVKP---PPPSHFTIHGLWPSYNKLIDG---------- 71
Query: 81 XXXXXXXXXXXXERHHRRRQKCWPEYCDDGNKLRPWEIKDLVAELDANWPTLSCKGGKSF 140
K W E C+ + L P +I+DL +LD WP+L +
Sbjct: 72 --------------------KMWLEDCNKEDPLDPTQIQDLEKQLDQKWPSLK---QTNL 108
Query: 141 EFWSYEWKKHGTCSGMGQHGYFAAALELKKRHDLAAVLAGAGIVPSDDESYSLGSIRDAI 200
EFWS EWKKHGTCS +GQH YF AAL L++ +L +LA G+ PSD ++Y+ I DA+
Sbjct: 109 EFWSLEWKKHGTCSNLGQHAYFEAALALERLTNLTKILADGGVGPSDVKTYTFREISDAL 168
Query: 201 AAATGAVPNLECNRDAAGETQLFQVYQCVDRSGKKLVDCQLPMQGKC--RDKVKLP 254
A TG +C+++ AG+T L +V QCVDR G+KL++C C DK+K+P
Sbjct: 169 ARGTGFRTYFKCSKNKAGDTLLSEVRQCVDRYGEKLINCTALSFDYCDNADKIKMP 224
>Os09g0537700 Ribonuclease T2 family protein
Length = 252
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 100/235 (42%), Gaps = 35/235 (14%)
Query: 23 FDFFYLVQQWPGSFC-DTQAGCCFPDTGKPAAEFGIHGLWPNYAKCRPXXXXXXXXXXXX 81
FDF+YL+ WPG++C D++ GCC P G P+ +F +
Sbjct: 30 FDFYYLILMWPGAYCTDSEYGCCVPKYGYPSEDFFVKSF--------------------- 68
Query: 82 XXXXXXXXXXXERHHRRRQKCWPEYCDDGNKLRPWEIKDLVAELDANWPTLSCKGGKSFE 141
+ +C + D NKL E L+ W + C
Sbjct: 69 -------MTFDSSENTAVVRCNSDNPFDINKLDSIE-----NNLNHYWSNIKCPRTDGVN 116
Query: 142 FWSYEWKKHGTCSGMGQHGYFAAALELKKRHDLAAVLAGAGIVPSDDESYSLGSIRDAIA 201
W EW +G CSG+ + YF A L+L+K D+ + LA GI P D + Y+ I+ A+
Sbjct: 117 SWKSEWNSYGVCSGLKELDYFKAGLQLRKNADVLSALAEQGIKP-DYQLYNTAFIKWAVN 175
Query: 202 AATGAVPNLECNRDAAGETQLFQVYQCVDRSGKKLVDCQLPMQGKCRDKVKLPTF 256
G P ++C G+ QL+++Y CVD+ K +DC + C +V F
Sbjct: 176 QKLGVTPGVQCRDGPFGKKQLYEIYLCVDKDAKSFIDCPVLPNLSCPAEVLFHPF 230
>Os01g0897200 Similar to Ribonuclease 2 precursor (EC 3.1.27.1)
Length = 284
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 108/258 (41%), Gaps = 68/258 (26%)
Query: 22 EFDFFYLVQQWPGSFCDTQAGCCFPD---TGKPAAEFGIHGLWPNYAKCRPXXXXXXXXX 78
EFD+F L QWPG+ C + CC + +P F IHGLWP+Y
Sbjct: 46 EFDYFALALQWPGTICASTRHCCAINGCCRSEPLQTFTIHGLWPDY-------------- 91
Query: 79 XXXXXXXXXXXXXXERHHRRRQKCWPEYCD----DGNKLRPWEIKDLVAELDANWPTLSC 134
WP C D +K+ P L L+ WP+L C
Sbjct: 92 --------------------DDGTWPACCRHTSFDMDKILP-----LKPTLEKYWPSLYC 126
Query: 135 KGGKSF-----EFWSYEWKKHGTCSG---MGQHGYFAAALELKKRHDLAAVLAGAGIVPS 186
+ FW++E +KHGTCS + YF AL+L ++++ +LA GI S
Sbjct: 127 SSSSTCFSGKGPFWAHESEKHGTCSSPVVKDELEYFTTALDLYFKYNVTEMLASGGIHVS 186
Query: 187 DDESYSLGSIRDAIAAATGAVPNLECNRDAAGETQLFQVYQCVDRSGKKLVDC------- 239
+ + Y+L + DAI A GA P + C + + E +L C D+ K L DC
Sbjct: 187 NGKQYALTDVIDAIKCAFGASPQIVCKKGSVEELRL-----CFDKDLKPL-DCLTTTATN 240
Query: 240 -QLPMQGKCRDKVKLPTF 256
+ + C + LPT+
Sbjct: 241 ENVSKKKYCPRYITLPTY 258
>Os01g0897300 Ribonuclease T2 family protein
Length = 271
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 89/218 (40%), Gaps = 46/218 (21%)
Query: 23 FDFFYLVQQWPGSFCDTQAGCCFPD---TGKPAAEFGIHGLWPNYAK------CRPXXXX 73
FD++ L QWPG+ C + CC + P F IHGLWP Y+ CRP
Sbjct: 25 FDYYVLALQWPGTVCRQTSHCCSSNGCCRSHPLKFFTIHGLWPQYSYGGWPSCCRPTTFD 84
Query: 74 XXXXXXXXXXXXXXXXXXXERHHRRRQKCWPEYCDDGNKLRPWEIKDLVAELDANWPTL- 132
P Y +G I L L+ WP+L
Sbjct: 85 GNKVAANH----------------------PSYLQNGIL-----ISRLKTILEEYWPSLY 117
Query: 133 -----SCKGGKSFEFWSYEWKKHGTCSG---MGQHGYFAAALELKKRHDLAAVLAGAGIV 184
+C GGK FW +EW+ HGTC ++ YF+ AL L ++++ L A I
Sbjct: 118 CGSFSTCFGGKR-PFWVHEWETHGTCGYPEIQDEYDYFSTALYLYSKYNVTKALKKAHIY 176
Query: 185 PSDDESYSLGSIRDAIAAATGAVPNLECNRDAAGETQL 222
P Y +G I AI + GA+P++ C + E +L
Sbjct: 177 PRGGRKYLVGHIVSAIEFSFGAMPSIVCKNGSVQELRL 214
>Os09g0538000 Ribonuclease T2 family protein
Length = 251
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 88/225 (39%), Gaps = 48/225 (21%)
Query: 21 DEFDFFYLVQQWPGSFC-DTQAGCCFPDTGKPAAEFGIHGLWPNYAKCRPXXXXXXXXXX 79
D+ F+ + WPG++C T+AGCC P T A F ++ N +
Sbjct: 28 DDKIFYQITFMWPGAYCAQTKAGCCMPKTD--VAGFTVYNATTNSSLSS----------- 74
Query: 80 XXXXXXXXXXXXXERHHRRRQKCWPEYCDDGNKLRPWEIKDL--VAELDANWPTLSCKGG 137
C + P+++ + V L W + C
Sbjct: 75 ---------------------------CSN----TPFDMNQIGDVTRLMQYWNNIRCPSK 103
Query: 138 KSFEFWSYEWKKHGTCSGMGQHGYFAAALELKKRHDLAAVLAGAGIVPSDDESYSLGSIR 197
+ W W+ G CS + + YF AL L+ + + + L GI P D YS+ I+
Sbjct: 104 SGQKGWKNAWETSGVCSDLTESAYFDTALALRDKINPLSRLVSNGIKP-DFGLYSVKKIK 162
Query: 198 DAIAAATGAVPNLECNRDAAGETQLFQVYQCVDRSGKKLVDCQLP 242
+ I GA ++C++ + QL+Q+Y CV K V+C P
Sbjct: 163 EVIEEGIGAPALIQCSKGPFNKFQLYQIYVCVAEDAKTFVECPSP 207
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,873,054
Number of extensions: 376911
Number of successful extensions: 1076
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1068
Number of HSP's successfully gapped: 9
Length of query: 256
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 157
Effective length of database: 11,866,615
Effective search space: 1863058555
Effective search space used: 1863058555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)