BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0344300 Os08g0344300|AK121224
         (109 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0344300  Protein of unknown function UPF0041 family pro...   228   8e-61
Os07g0449100  Similar to Light induced protein like               223   3e-59
Os07g0553700  Similar to Light induced protein like               105   7e-24
Os08g0412500  Protein of unknown function UPF0041 family pro...    81   2e-16
Os09g0373000  Similar to Brain protein 44-like protein (PNAS...    79   7e-16

>Os08g0344300 Protein of unknown function UPF0041 family protein
          Length = 109

 Score =  228 bits (581), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   MASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWS 60
           MASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWS
Sbjct: 1   MASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWS 60

Query: 61  RYSMVITPKNWNLFSVNVAMAGTGLYQLSRKIRKDYFSDQKDDVASLEG 109
           RYSMVITPKNWNLFSVNVAMAGTGLYQLSRKIRKDYFSDQKDDVASLEG
Sbjct: 61  RYSMVITPKNWNLFSVNVAMAGTGLYQLSRKIRKDYFSDQKDDVASLEG 109



>Os07g0449100 Similar to Light induced protein like
          Length = 109

 Score =  223 bits (567), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 106/109 (97%), Positives = 107/109 (98%)

Query: 1   MASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWS 60
           MASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWS
Sbjct: 1   MASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWS 60

Query: 61  RYSMVITPKNWNLFSVNVAMAGTGLYQLSRKIRKDYFSDQKDDVASLEG 109
           RYSMVITPKNWNLFSVNVAMAGTGLYQLSRKIRKDYFSD+KD  ASLEG
Sbjct: 61  RYSMVITPKNWNLFSVNVAMAGTGLYQLSRKIRKDYFSDEKDAAASLEG 109



>Os07g0553700 Similar to Light induced protein like
          Length = 82

 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 49/59 (83%), Positives = 53/59 (89%), Gaps = 1/59 (1%)

Query: 2  ASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVA-VACTGVIW 59
          ASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPE ISYPQQV   +C  +++
Sbjct: 3  ASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMISYPQQVGRFSCQLILF 61



>Os08g0412500 Protein of unknown function UPF0041 family protein
          Length = 107

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 56/102 (54%)

Query: 1   MASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWS 60
           MA+  +AFWN P GP+T HFW P   WG  +A + D  KPPE IS     A+     ++ 
Sbjct: 1   MATAAKAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAAMCVYSGLFM 60

Query: 61  RYSMVITPKNWNLFSVNVAMAGTGLYQLSRKIRKDYFSDQKD 102
           R++ ++ P+N+ L + + +     LYQ SR  R   + + K+
Sbjct: 61  RFAWMVQPRNYLLLACHASNESVQLYQFSRWARAQGYLENKE 102



>Os09g0373000 Similar to Brain protein 44-like protein (PNAS-115)
          Length = 107

 Score = 79.0 bits (193), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)

Query: 1   MASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWS 60
           M++ ++AF N P GPKT HFW P   WG  +A + D  KPPE IS     A+     ++ 
Sbjct: 1   MSTAVKAFLNSPVGPKTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAAMCVYSGLFM 60

Query: 61  RYSMVITPKNWNLFSVNVAMAGTGLYQLSRKIRKDYFSDQKDDVA 105
           R++ ++ P+N+ L + + +     LYQ+SR  R   + ++K+  A
Sbjct: 61  RFAWMVQPRNYLLLACHASNESVQLYQMSRWARAQGYLEKKEPEA 105



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.132    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,894,794
Number of extensions: 132994
Number of successful extensions: 205
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 5
Length of query: 109
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 32
Effective length of database: 13,015,323
Effective search space: 416490336
Effective search space used: 416490336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)