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Os09g0373000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Brain protein 44-like protein (PNAS-115).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0149) R2 : 0.0829
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.201 (0.0313) R2dN8 : 0.107 R2N8 : 0.0829
σ : 0.28
deviance : 36.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.3 0.234 11.6 -0.561 0.317 0.278 -0.149 -0.109 -0.276 13.5 10 10 -- --
25.25 0.236 11.6 -0.551 0.3 0.266 -0.033 -- -0.273 13.5 10 10 -- --
25.25 0.236 11.6 -0.553 0.3 0.267 -- -0.0116 -0.274 13.5 10 10 -- --
25.22 0.234 11.6 -0.558 0.309 0.272 -- -- -0.281 13.5 9.99 8 -- --
27.55 0.246 11.6 -0.55 -- 0.0895 -- -0.0138 -0.268 -- 10 10 -- --
27.69 0.247 11.6 -0.538 0.112 -- -0.132 -- -0.258 17.9 -- -- -- --
27.74 0.247 11.6 -0.537 0.111 -- -- -- -0.259 18 -- -- -- --
27.55 0.246 11.6 -0.549 -- 0.0894 -- -- -0.268 -- 10 10 -- --
32.66 0.266 11.6 -- 0.257 0.245 -- -- -0.202 13.6 16.37 8 -- --
28.37 0.249 11.6 -0.541 -- -- -- -- -0.261 -- -- -- -- --
35.35 0.278 11.5 -- 0.119 -- -- -- -0.199 17.7 -- -- -- --
35.08 0.276 11.5 -- -- 0.13 -- -- -0.197 -- 21.02 77 -- --
36.09 0.28 11.5 -- -- -- -- -- -0.201 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.32 radiation 1.0 90 > th dose independent rect. 17 14
3 24.46 radiation 10.0 10 < th dose independent rect. 6 5
5 24.48 radiation 10.0 10 < th dose independent rect. 6 16
9 24.52 radiation 1.0 90 < th dose independent sin 11 NA
10 24.52 radiation 1.0 90 < th dose dependent sin 11 NA
11 24.53 radiation 1.0 90 > th dose independent sin 11 NA
12 24.56 radiation 10.0 10 < th dose independent rect. 6 14
13 24.58 radiation 20.0 90 < th dose independent rect. 15 19
17 24.59 radiation 1.0 30 > th dose dependent rect. 17 14
18 24.62 atmosphere 1005.0 270 > th dose dependent rect. 3 3
19 24.66 temperature 20.0 270 > th dose independent rect. 18 9
21 24.67 atmosphere 1005.0 270 > th dose dependent rect. 2 5
25 24.69 atmosphere 1005.0 10 > th dose dependent rect. 5 4
26 24.69 atmosphere 1005.0 10 > th dose dependent rect. 1 8
29 24.70 radiation 10.0 10 < th dose independent rect. 17 18
37 24.72 radiation 20.0 90 < th dose independent rect. 13 21
43 24.77 radiation 20.0 10 < th dose dependent rect. 6 5
44 24.77 atmosphere 1005.0 10 > th dose dependent rect. 3 6
55 24.81 radiation 10.0 1440 > th dose independent rect. 11 4
61 24.83 humidity 90.0 30 < th dose dependent rect. 17 14
71 24.91 radiation 10.0 1440 > th dose independent rect. 13 2
73 24.91 radiation 10.0 10 < th dose independent rect. 6 19
77 24.92 radiation 20.0 90 < th dose independent rect. 5 5
81 24.93 temperature 20.0 270 > th dose dependent rect. 5 2
83 24.94 temperature 25.0 10 > th dose independent rect. 5 2
85 24.94 radiation 10.0 10 < th dose independent rect. 17 23
91 24.96 temperature 25.0 10 > th dose independent rect. 5 4
104 24.99 radiation 20.0 1440 < th dose dependent rect. 14 1
107 25.00 radiation 10.0 10 < th dose independent rect. 23 23
109 25.01 humidity 70.0 1440 > th dose independent rect. 14 1
120 25.02 humidity 90.0 30 < th dose dependent rect. 17 16
122 25.04 radiation 10.0 10 < th dose independent sin 23 NA
132 25.04 humidity 50.0 270 > th dose dependent rect. 18 9
134 25.05 radiation 1.0 90 > th dose independent rect. 5 2
157 25.08 temperature 20.0 10 > th dose independent rect. 20 9
160 25.09 radiation 10.0 1440 > th dose independent rect. 11 7
183 25.12 humidity 70.0 1440 < th dose independent rect. 14 1
184 25.12 temperature 20.0 270 > th dose independent rect. 7 19
188 25.13 radiation 10.0 10 < th dose independent rect. 14 21
195 25.14 humidity 90.0 10 < th dose independent rect. 6 1
197 25.14 temperature 20.0 10 > th dose independent rect. 22 7
208 25.15 atmosphere 1005.0 270 > th dose independent rect. 3 4
220 25.17 humidity 90.0 30 < th dose independent rect. 3 4
222 25.17 humidity 50.0 720 > th dose dependent rect. 18 1
230 25.18 humidity 50.0 90 > th dose independent rect. 7 23
233 25.19 temperature 20.0 90 > th dose independent rect. 21 7
254 25.19 wind 3.0 30 < th dose dependent rect. 6 1
274 25.21 precipitation 0.1 30 < th dose independent rect. 7 23
280 25.21 radiation 30.0 90 < th dose dependent rect. 5 5
282 25.21 radiation 20.0 10 < th dose dependent rect. 6 14
283 25.21 precipitation 0.1 30 < th dose dependent rect. 7 23
285 25.22 atmosphere 1005.0 10 > th dose independent rect. 6 1
303 25.22 radiation 30.0 90 < th dose dependent rect. 5 13
304 25.23 wind 3.0 30 < th dose independent rect. 6 1
309 25.23 humidity 50.0 270 > th dose independent rect. 7 21
320 25.23 radiation 1.0 30 > th dose dependent rect. 6 1
323 25.23 radiation 20.0 10 < th dose dependent rect. 6 16
338 25.25 humidity 80.0 90 > th dose independent rect. 19 10
365 25.26 radiation 10.0 1440 < th dose dependent rect. 10 7
374 25.27 temperature 30.0 30 < th dose dependent rect. 6 1
380 25.28 wind 9.0 1440 < th dose independent rect. 7 1
381 25.28 temperature 10.0 1440 > th dose independent rect. 7 1
385 25.28 temperature 30.0 1440 < th dose independent rect. 7 1
389 25.28 humidity 50.0 1440 > th dose independent rect. 7 1
394 25.28 atmosphere 995.0 1440 > th dose independent rect. 7 1
395 25.28 atmosphere 1015.0 1440 < th dose independent rect. 7 1
397 25.28 atmosphere 1005.0 90 > th dose independent rect. 5 4
402 25.28 temperature 10.0 1440 > th dose independent rect. 8 23
407 25.28 humidity 60.0 30 > th dose dependent rect. 6 1
412 25.28 radiation 1.0 90 < th dose dependent rect. 19 12
413 25.28 radiation 40.0 90 < th dose dependent rect. 16 18
415 25.28 radiation 40.0 90 < th dose dependent rect. 13 21
420 25.29 temperature 10.0 30 > th dose independent rect. 6 1
423 25.29 temperature 30.0 30 < th dose independent rect. 6 1
424 25.29 humidity 50.0 30 > th dose independent rect. 6 1
427 25.29 atmosphere 995.0 30 > th dose independent rect. 6 1
429 25.29 atmosphere 1015.0 30 < th dose independent rect. 6 1
430 25.29 radiation 20.0 30 < th dose independent rect. 6 1
433 25.29 precipitation 0.1 30 < th dose independent rect. 6 1
454 25.29 temperature 10.0 30 > th dose independent rect. 7 23
455 25.29 atmosphere 995.0 30 > th dose independent rect. 7 23
456 25.29 radiation 10.0 10 < th dose independent rect. 9 23
459 25.29 precipitation 0.1 30 < th dose dependent rect. 6 1
462 25.29 radiation 1.0 90 < th dose dependent rect. 19 15
465 25.30 radiation 10.0 10 < th dose independent no NA NA
472 25.30 radiation 20.0 10 < th dose dependent rect. 6 1
476 25.30 radiation 10.0 1440 < th dose dependent rect. 10 15
480 25.31 wind 1.0 30 > th dose independent rect. 6 1
484 25.31 wind 1.0 270 > th dose independent rect. 3 4
493 25.31 radiation 10.0 1440 < th dose dependent rect. 10 9
504 25.32 temperature 25.0 270 > th dose independent rect. 6 1
518 25.32 humidity 90.0 30 < th dose independent rect. 17 14
521 25.32 temperature 10.0 30 > th dose dependent rect. 6 1
530 25.33 atmosphere 1005.0 10 > th dose independent rect. 5 4
534 25.33 humidity 90.0 30 < th dose independent rect. 17 16
550 25.33 humidity 50.0 720 > th dose dependent rect. 14 15
551 25.33 radiation 40.0 10 < th dose dependent rect. 17 17
611 25.35 humidity 60.0 10 > th dose dependent rect. 18 12
618 25.36 radiation 1.0 720 < th dose independent rect. 18 1
620 25.36 radiation 1.0 90 < th dose independent rect. 19 12
657 25.38 radiation 10.0 1440 < th dose independent rect. 14 1
659 25.38 radiation 10.0 30 > th dose independent rect. 9 8
663 25.38 radiation 10.0 10 > th dose independent rect. 9 23
719 25.40 temperature 20.0 10 > th dose dependent rect. 5 4
738 25.41 radiation 10.0 1440 > th dose independent sin 17 NA
748 25.41 radiation 1.0 90 < th dose independent rect. 19 16
755 25.41 humidity 90.0 10 < th dose dependent rect. 6 1
777 25.42 temperature 20.0 270 > th dose independent rect. 7 16
779 25.42 precipitation 0.1 30 < th dose independent rect. 17 16
791 25.42 humidity 80.0 30 < th dose dependent rect. 17 11
796 25.42 precipitation 0.1 30 < th dose dependent rect. 17 16
882 25.46 humidity 80.0 1440 > th dose independent rect. 11 6
884 25.46 wind 5.0 90 < th dose independent rect. 16 17
886 25.46 radiation 10.0 1440 < th dose dependent sin 17 NA
895 25.46 humidity 80.0 30 < th dose dependent rect. 17 9
904 25.47 wind 5.0 270 < th dose independent rect. 14 17
956 25.49 humidity 80.0 1440 > th dose independent rect. 11 8
964 25.49 humidity 50.0 10 > th dose dependent sin 12 NA