Os07g0553700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Light induced protein like.
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Os07g0553700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Light induced protein like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.86 | 0.409 | 11 | 0.557 | 0.903 | -0.804 | -0.218 | 1.05 | 0.507 | 4.48 | 39.41 | 1396 | -- | -- |
| 77.38 | 0.41 | 11 | 0.438 | 0.893 | -0.74 | -0.163 | -- | 0.474 | 4.4 | 37.97 | 1396 | -- | -- |
| 75.89 | 0.406 | 11 | 0.549 | 0.904 | -0.824 | -- | 1.02 | 0.517 | 4.48 | 37.99 | 1395 | -- | -- |
| 77.4 | 0.41 | 11 | 0.445 | 0.907 | -0.753 | -- | -- | 0.48 | 4.47 | 37.14 | 1401 | -- | -- |
| 86.94 | 0.434 | 11 | 0.474 | -- | -1.17 | -- | 1.04 | 0.497 | -- | 31.94 | 587 | -- | -- |
| 95.77 | 0.459 | 11 | 0.375 | 0.863 | -- | -0.259 | -- | 0.341 | 4.68 | -- | -- | -- | -- |
| 95.95 | 0.459 | 11 | 0.376 | 0.862 | -- | -- | -- | 0.342 | 4.71 | -- | -- | -- | -- |
| 81.42 | 0.42 | 11 | 0.458 | -- | -1.23 | -- | -- | 0.464 | -- | -0.0009252 | 570 | -- | -- |
| 82.46 | 0.423 | 11 | -- | 0.909 | -0.724 | -- | -- | 0.427 | 4.45 | 37.66 | 1397 | -- | -- |
| 135.38 | 0.544 | 11 | 0.409 | -- | -- | -- | -- | 0.365 | -- | -- | -- | -- | -- |
| 99.68 | 0.467 | 11 | -- | 0.869 | -- | -- | -- | 0.3 | 4.69 | -- | -- | -- | -- |
| 86.87 | 0.434 | 11 | -- | -- | -1.23 | -- | -- | 0.414 | -- | -7.606 | 551 | -- | -- |
| 139.79 | 0.552 | 11 | -- | -- | -- | -- | -- | 0.319 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.98 | radiation | 1 | 1440 | > th | dose dependent | rect. | 7 | 5 |
| 21 | 74.63 | radiation | 30 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 55 | 74.87 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 58 | 74.96 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 61 | 74.98 | radiation | 30 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 64 | 75.03 | radiation | 30 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 73 | 75.18 | radiation | 40 | 1440 | < th | dose dependent | rect. | 2 | 10 |
| 74 | 75.19 | radiation | 40 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 114 | 75.27 | radiation | 30 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 115 | 75.28 | radiation | 30 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 117 | 75.28 | radiation | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 128 | 75.31 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 134 | 75.35 | radiation | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 148 | 75.53 | radiation | 40 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 155 | 75.57 | radiation | 1 | 1440 | > th | dose dependent | sin | 8 | NA |
| 165 | 75.68 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 171 | 75.72 | radiation | 30 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 321 | 75.98 | radiation | 40 | 1440 | < th | dose independent | sin | 6 | NA |
| 449 | 76.20 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 471 | 76.22 | radiation | 40 | 1440 | > th | dose dependent | no | NA | NA |
| 629 | 76.25 | radiation | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 948 | 76.64 | radiation | 40 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 949 | 76.65 | radiation | 40 | 1440 | > th | dose independent | sin | 7 | NA |
| 953 | 76.66 | radiation | 40 | 1440 | < th | dose dependent | sin | 8 | NA |