BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0553700 Os07g0553700|AK061510
         (82 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G05590.2  | chr4:2907176-2908297 FORWARD LENGTH=147            108   5e-25
AT4G22310.1  | chr4:11791443-11792638 FORWARD LENGTH=109          103   2e-23
AT4G14695.1  | chr4:8419833-8420845 FORWARD LENGTH=110             99   4e-22
AT5G20090.1  | chr5:6787246-6788000 REVERSE LENGTH=111             62   7e-11

>AT4G05590.2 | chr4:2907176-2908297 FORWARD LENGTH=147
          Length = 146

 Score =  108 bits (271), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 56/74 (75%)

Query: 1  MAASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMISYPQQVGRFSCQLIL 60
          MA SKLQA WNHPAGPKTIHFWAPTFKWGISIAN+ADF KPPE +SYPQQ+G      + 
Sbjct: 1  MATSKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFQKPPETLSYPQQIGIILTIGLS 60

Query: 61 FLTSVYHQFMYNVV 74
          +L S +   MY  V
Sbjct: 61 YLYSAHIAVMYRCV 74



>AT4G22310.1 | chr4:11791443-11792638 FORWARD LENGTH=109
          Length = 108

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 53/61 (86%), Gaps = 1/61 (1%)

Query: 1  MAASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMISYPQQVGRFSCQLIL 60
          MA SKLQA WNHPAGPKTIHFWAPTFKWGISIAN+ADFAKPPE +SYPQQ+   +C  ++
Sbjct: 1  MATSKLQAIWNHPAGPKTIHFWAPTFKWGISIANIADFAKPPEKLSYPQQIA-VTCTGVI 59

Query: 61 F 61
          +
Sbjct: 60 W 60



>AT4G14695.1 | chr4:8419833-8420845 FORWARD LENGTH=110
          Length = 109

 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 46/52 (88%)

Query: 1  MAASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMISYPQQVG 52
          MA SKLQA WNHPAGPKTIHFWAPTFKWGISIAN+ADF KPPE ISY QQ+ 
Sbjct: 1  MATSKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFQKPPENISYLQQIA 52



>AT5G20090.1 | chr5:6787246-6788000 REVERSE LENGTH=111
          Length = 110

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 29/46 (63%)

Query: 1  MAASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMIS 46
          MA S+ QAF N P GPKT HFW P   WG   A + D  KPPEMIS
Sbjct: 1  MATSRFQAFLNSPIGPKTTHFWGPIANWGFVAAGLVDMQKPPEMIS 46



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.137    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,740,194
Number of extensions: 54732
Number of successful extensions: 115
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 4
Length of query: 82
Length of database: 11,106,569
Length adjustment: 53
Effective length of query: 29
Effective length of database: 9,653,521
Effective search space: 279952109
Effective search space used: 279952109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 105 (45.1 bits)