BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0553700 Os07g0553700|AK061510
         (82 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0553700  Similar to Light induced protein like               172   3e-44
Os07g0449100  Similar to Light induced protein like               105   7e-24
Os08g0344300  Protein of unknown function UPF0041 family pro...   105   7e-24

>Os07g0553700 Similar to Light induced protein like
          Length = 82

 Score =  172 bits (437), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 1  MAASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMISYPQQVGRFSCQLIL 60
          MAASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMISYPQQVGRFSCQLIL
Sbjct: 1  MAASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMISYPQQVGRFSCQLIL 60

Query: 61 FLTSVYHQFMYNVVVLTLMYDV 82
          FLTSVYHQFMYNVVVLTLMYDV
Sbjct: 61 FLTSVYHQFMYNVVVLTLMYDV 82



>Os07g0449100 Similar to Light induced protein like
          Length = 109

 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 49/59 (83%), Positives = 53/59 (89%), Gaps = 1/59 (1%)

Query: 3  ASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMISYPQQVGRFSCQLILF 61
          ASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPE ISYPQQV   +C  +++
Sbjct: 2  ASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVA-VACTGVIW 59



>Os08g0344300 Protein of unknown function UPF0041 family protein
          Length = 109

 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 49/59 (83%), Positives = 53/59 (89%), Gaps = 1/59 (1%)

Query: 3  ASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMISYPQQVGRFSCQLILF 61
          ASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPE ISYPQQV   +C  +++
Sbjct: 2  ASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVA-VACTGVIW 59



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.137    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,740,712
Number of extensions: 86731
Number of successful extensions: 168
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 4
Length of query: 82
Length of database: 17,035,801
Length adjustment: 52
Effective length of query: 30
Effective length of database: 14,320,673
Effective search space: 429620190
Effective search space used: 429620190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)