Os07g0449100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Light induced protein like.
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Os07g0449100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Light induced protein like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.19 | 0.211 | 10.7 | -0.572 | 0.545 | -0.757 | 0.128 | 0.0617 | -0.173 | 8.66 | 20.02 | 4107 | -- | -- |
| 20.2 | 0.209 | 10.7 | -0.581 | 0.543 | -0.769 | 0.132 | -- | -0.175 | 8.65 | 20.01 | 4099 | -- | -- |
| 20.25 | 0.21 | 10.7 | -0.566 | 0.547 | -0.758 | -- | 0.0629 | -0.172 | 8.67 | 20.01 | 4153 | -- | -- |
| 20.25 | 0.21 | 10.7 | -0.574 | 0.548 | -0.767 | -- | -- | -0.176 | 8.68 | 20 | 4177 | -- | -- |
| 36.06 | 0.28 | 10.7 | -0.586 | -- | -0.71 | -- | 0.143 | -0.154 | -- | 20.9 | 3656 | -- | -- |
| 30.71 | 0.26 | 10.7 | -1.05 | 0.547 | -- | 0.175 | -- | -0.384 | 8.87 | -- | -- | -- | -- |
| 30.81 | 0.26 | 10.7 | -1.05 | 0.546 | -- | -- | -- | -0.384 | 8.87 | -- | -- | -- | -- |
| 36.09 | 0.28 | 10.7 | -0.611 | -- | -0.733 | -- | -- | -0.154 | -- | 20.9 | 3651 | -- | -- |
| 22.44 | 0.221 | 10.7 | -- | 0.553 | -1.08 | -- | -- | -0.0734 | 8.66 | 18.5 | 14312 | -- | -- |
| 47.84 | 0.323 | 10.7 | -1.05 | -- | -- | -- | -- | -0.38 | -- | -- | -- | -- | -- |
| 59.71 | 0.361 | 10.7 | -- | 0.545 | -- | -- | -- | -0.267 | 9.01 | -- | -- | -- | -- |
| 38.84 | 0.29 | 10.7 | -- | -- | -1.02 | -- | -- | -0.0615 | -- | 18.3 | 23870 | -- | -- |
| 76.76 | 0.409 | 10.7 | -- | -- | -- | -- | -- | -0.264 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 4 | 20.01 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 7 | 20.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 17 |
| 12 | 20.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 11 | 17 |
| 27 | 20.11 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 32 | 20.12 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 37 | 20.14 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 45 | 20.16 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 55 | 20.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 64 | 20.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 19 |
| 65 | 20.18 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 152 | 20.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 158 | 20.23 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 188 | 20.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 194 | 20.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 6 |
| 196 | 20.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 9 |
| 211 | 20.24 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 213 | 20.25 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 232 | 20.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 6 |
| 255 | 20.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 338 | 20.34 | temperature | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 419 | 20.42 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 490 | 20.47 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 515 | 20.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 567 | 20.53 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 633 | 20.59 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 655 | 20.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 686 | 20.64 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 794 | 20.76 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 923 | 20.90 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 11 |