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Os08g0344300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function UPF0041 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0177) R2 : 0.0269
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.132 (0.0372) R2dN8 : 0.0347 R2N8 : 0.0269
σ : 0.333
deviance : 50.95
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.24 0.236 11.5 -0.675 0.164 0.434 0.025 1.74 -0.355 22.8 8.681 5176 -- --
27.29 0.243 11.4 -0.802 0.179 0.199 -0.0433 -- -0.287 21.9 8.569 6835 -- --
24.5 0.231 11.5 -0.63 0.144 0.347 -- 1.21 -0.362 22.8 9.835 5177 -- --
27.26 0.243 11.4 -0.805 0.179 0.198 -- -- -0.289 22.3 8.59 6826 -- --
25.98 0.237 11.5 -0.686 -- 0.328 -- 1.09 -0.381 -- 9.9 5177 -- --
27.83 0.247 11.4 -0.899 0.176 -- 0.0276 -- -0.232 22.3 -- -- -- --
27.84 0.247 11.4 -0.9 0.176 -- -- -- -0.232 22.3 -- -- -- --
27.38 0.244 11.4 -0.818 -- 0.282 -- -- -0.417 -- 10.45 5217 -- --
32.89 0.267 11.4 -- 0.199 0.795 -- -- -0.0537 22.5 6.7 41070 -- --
29.71 0.255 11.4 -0.897 -- -- -- -- -0.232 -- -- -- -- --
49.18 0.328 11.4 -- 0.172 -- -- -- -0.132 21.9 -- -- -- --
34.62 0.274 11.4 -- -- 0.83 -- -- -0.000998 -- 6.2 41068 -- --
50.95 0.333 11.4 -- -- -- -- -- -0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.53 wind 7.0 43200 > th dose dependent rect. 18 1
2 24.55 wind 9.0 43200 > th dose independent rect. 18 1
3 24.59 humidity 90.0 14400 > th dose dependent rect. 2 1
4 24.60 wind 9.0 43200 < th dose independent rect. 18 1
6 24.63 humidity 90.0 14400 > th dose dependent rect. 2 4
9 24.68 wind 5.0 14400 > th dose independent rect. 17 2
12 24.72 wind 3.0 14400 > th dose dependent rect. 17 1
21 24.81 wind 5.0 14400 < th dose independent rect. 17 3
22 24.81 wind 5.0 14400 < th dose independent rect. 16 5
25 24.85 wind 5.0 14400 > th dose independent rect. 16 5
34 24.88 wind 3.0 14400 > th dose dependent rect. 17 4
51 25.03 atmosphere 1005.0 14400 > th dose independent rect. 8 1
52 25.03 humidity 80.0 4320 < th dose independent rect. 3 2
56 25.04 humidity 80.0 4320 < th dose independent rect. 23 1
57 25.04 atmosphere 1005.0 14400 > th dose independent rect. 6 1
58 25.04 atmosphere 1005.0 14400 > th dose independent rect. 6 3
60 25.04 wind 9.0 4320 > th dose dependent sin 15 NA
61 25.05 humidity 80.0 4320 > th dose independent rect. 3 2
62 25.05 wind 9.0 4320 > th dose dependent rect. 13 8
67 25.06 wind 9.0 4320 > th dose dependent rect. 18 4
73 25.07 wind 9.0 4320 > th dose dependent rect. 13 15
79 25.08 humidity 80.0 4320 < th dose dependent rect. 3 1
89 25.09 atmosphere 1005.0 14400 < th dose independent rect. 8 1
94 25.09 wind 9.0 4320 > th dose dependent rect. 18 8
109 25.11 atmosphere 995.0 14400 > th dose independent rect. 18 3
116 25.13 atmosphere 995.0 14400 > th dose independent rect. 18 1
119 25.13 atmosphere 1005.0 14400 > th dose independent rect. 5 13
121 25.13 wind 9.0 14400 < th dose dependent rect. 17 1
137 25.15 wind 9.0 4320 < th dose independent rect. 18 4
145 25.16 wind 9.0 4320 > th dose independent rect. 18 4
162 25.17 wind 9.0 4320 < th dose independent rect. 18 8
175 25.18 humidity 80.0 4320 < th dose independent rect. 22 7
178 25.18 atmosphere 1005.0 14400 > th dose independent rect. 6 9
186 25.18 wind 9.0 4320 > th dose dependent rect. 20 1
191 25.19 atmosphere 1005.0 14400 > th dose independent sin 1 NA
192 25.19 atmosphere 995.0 14400 < th dose independent rect. 17 1
203 25.19 humidity 80.0 4320 > th dose independent rect. 22 7
205 25.19 humidity 80.0 4320 > th dose independent rect. 22 9
210 25.19 atmosphere 1005.0 14400 < th dose independent rect. 5 13
220 25.19 atmosphere 995.0 14400 < th dose dependent rect. 16 1
273 25.21 wind 9.0 4320 < th dose independent sin 14 NA
295 25.21 temperature 25.0 14400 > th dose dependent rect. 24 3
317 25.23 wind 9.0 4320 < th dose independent rect. 20 1
319 25.23 wind 9.0 4320 < th dose independent rect. 15 6
327 25.23 humidity 80.0 4320 < th dose independent rect. 22 9
346 25.23 temperature 25.0 14400 > th dose dependent rect. 24 1
360 25.24 wind 9.0 4320 > th dose independent rect. 18 8
370 25.24 wind 9.0 4320 < th dose independent rect. 15 11
384 25.24 atmosphere 1005.0 14400 > th dose independent rect. 13 21
392 25.25 wind 1.0 43200 < th dose independent rect. 4 2
394 25.25 atmosphere 995.0 14400 > th dose independent rect. 12 2
420 25.25 atmosphere 1005.0 14400 > th dose independent rect. 15 19
444 25.26 atmosphere 1005.0 14400 < th dose independent sin 0 NA
488 25.26 atmosphere 1010.0 14400 < th dose dependent rect. 11 1
491 25.27 wind 9.0 4320 > th dose independent sin 14 NA
493 25.27 atmosphere 1005.0 14400 > th dose independent no NA NA
496 25.27 temperature 25.0 14400 < th dose independent rect. 3 1
497 25.27 wind 1.0 43200 > th dose independent rect. 4 2
535 25.27 atmosphere 1010.0 14400 < th dose dependent rect. 8 1
548 25.28 humidity 80.0 4320 > th dose independent rect. 23 1
579 25.28 atmosphere 1005.0 14400 < th dose independent rect. 13 20
590 25.28 atmosphere 1005.0 14400 > th dose independent rect. 8 23
653 25.29 radiation 10.0 43200 < th dose dependent rect. 13 1
659 25.29 wind 9.0 4320 > th dose dependent rect. 15 6
716 25.30 atmosphere 1010.0 14400 < th dose dependent rect. 4 1
740 25.30 wind 9.0 4320 > th dose dependent rect. 15 13
747 25.31 atmosphere 995.0 14400 > th dose independent rect. 12 7
752 25.31 atmosphere 995.0 14400 > th dose independent rect. 12 9
760 25.31 atmosphere 995.0 14400 > th dose independent rect. 7 12
761 25.31 atmosphere 995.0 14400 > th dose independent rect. 9 12
763 25.31 atmosphere 995.0 14400 > th dose independent rect. 7 14
820 25.32 atmosphere 1005.0 14400 < th dose independent no NA NA
821 25.32 temperature 25.0 14400 > th dose independent rect. 2 1
823 25.32 precipitation 0.1 14400 < th dose independent rect. 17 1
835 25.32 atmosphere 995.0 14400 > th dose independent rect. 9 10
872 25.32 atmosphere 1010.0 14400 < th dose dependent sin 1 NA
876 25.32 precipitation 0.1 14400 < th dose dependent rect. 17 1
912 25.33 atmosphere 1005.0 14400 > th dose independent rect. 13 2
918 25.33 wind 9.0 4320 < th dose independent rect. 20 6
980 25.33 atmosphere 1010.0 14400 < th dose dependent sin 23 NA