BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0344300 Os08g0344300|AK121224
         (109 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22310.1  | chr4:11791443-11792638 FORWARD LENGTH=109          191   8e-50
AT4G14695.1  | chr4:8419833-8420845 FORWARD LENGTH=110            175   4e-45
AT4G05590.2  | chr4:2907176-2908297 FORWARD LENGTH=147            152   4e-38
AT5G20090.1  | chr5:6787246-6788000 REVERSE LENGTH=111             81   1e-16

>AT4G22310.1 | chr4:11791443-11792638 FORWARD LENGTH=109
          Length = 108

 Score =  191 bits (484), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 87/104 (83%), Positives = 96/104 (92%)

Query: 3   SKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRY 62
           SKLQA WNHPAGPKTIHFWAPTFKWGISIAN+ADFAKPPEK+SYPQQ+AV CTGVIWSRY
Sbjct: 4   SKLQAIWNHPAGPKTIHFWAPTFKWGISIANIADFAKPPEKLSYPQQIAVTCTGVIWSRY 63

Query: 63  SMVITPKNWNLFSVNVAMAGTGLYQLSRKIRKDYFSDQKDDVAS 106
           SMVI PKNWNLFSVNVAMAGTG+YQL+RKI+ DY ++ +  VAS
Sbjct: 64  SMVINPKNWNLFSVNVAMAGTGIYQLARKIKHDYATEAEPAVAS 107



>AT4G14695.1 | chr4:8419833-8420845 FORWARD LENGTH=110
          Length = 109

 Score =  175 bits (444), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 81/107 (75%), Positives = 91/107 (85%), Gaps = 1/107 (0%)

Query: 3   SKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRY 62
           SKLQA WNHPAGPKTIHFWAPTFKWGISIAN+ADF KPPE ISY QQ+AV CTG+IW R 
Sbjct: 4   SKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFQKPPENISYLQQIAVTCTGMIWCRC 63

Query: 63  SMVITPKNWNLFSVNVAMAGTGLYQLSRKIRKDYFSDQKDDVASLEG 109
           S +ITPKNWNLFSVNVAMA TG+YQL+RKI+ DY S+ +  V  +EG
Sbjct: 64  STIITPKNWNLFSVNVAMAATGIYQLTRKIKYDYVSEAEAAV-EIEG 109



>AT4G05590.2 | chr4:2907176-2908297 FORWARD LENGTH=147
          Length = 146

 Score =  152 bits (383), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 75/141 (53%), Positives = 87/141 (61%), Gaps = 38/141 (26%)

Query: 3   SKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVAC-------- 54
           SKLQA WNHPAGPKTIHFWAPTFKWGISIAN+ADF KPPE +SYPQQ+ +          
Sbjct: 4   SKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFQKPPETLSYPQQIGIILTIGLSYLY 63

Query: 55  ------------------------------TGVIWSRYSMVITPKNWNLFSVNVAMAGTG 84
                                         TG++WSRYS VITPKNWNLFSV++ MA TG
Sbjct: 64  SAHIAVMYRCVNFNVYMMPRMAVIVSVITGTGLVWSRYSTVITPKNWNLFSVSLGMAVTG 123

Query: 85  LYQLSRKIRKDYFSDQKDDVA 105
           +YQL+RKI+ DY  +    VA
Sbjct: 124 IYQLTRKIKHDYVYEANSIVA 144



>AT5G20090.1 | chr5:6787246-6788000 REVERSE LENGTH=111
          Length = 110

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 3   SKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRY 62
           S+ QAF N P GPKT HFW P   WG   A + D  KPPE IS     A+     ++ R+
Sbjct: 4   SRFQAFLNSPIGPKTTHFWGPIANWGFVAAGLVDMQKPPEMISGNMSSAMCVYSALFMRF 63

Query: 63  SMVITPKNWNLFSVNVAMAGTGLYQLSRKIR-KDYFSDQKDD 103
           + ++ P+N+ L + + +     LYQLSR  R + Y S +K++
Sbjct: 64  AWMVQPRNYLLLACHASNETVQLYQLSRWARAQGYLSSKKEE 105



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.132    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,468,842
Number of extensions: 86453
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 5
Length of query: 109
Length of database: 11,106,569
Length adjustment: 78
Effective length of query: 31
Effective length of database: 8,968,121
Effective search space: 278011751
Effective search space used: 278011751
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)