Os08g0412500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0041 family protein.
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Os08g0412500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0041 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.15 | 0.361 | 9.58 | -1.62 | 0.328 | -0.987 | -0.809 | 1.27 | -0.623 | 6.44 | 23.24 | 862 | -- | -- |
| 60.98 | 0.364 | 9.56 | -1.48 | 0.348 | -1.25 | -0.666 | -- | -0.591 | 6.35 | 22.57 | 883 | -- | -- |
| 60.32 | 0.362 | 9.58 | -1.65 | 0.285 | -1.04 | -- | 1.33 | -0.614 | 5.73 | 22.64 | 1136 | -- | -- |
| 62.02 | 0.367 | 9.56 | -1.49 | 0.312 | -1.27 | -- | -- | -0.58 | 6.29 | 22.42 | 946 | -- | -- |
| 64.39 | 0.374 | 9.59 | -1.65 | -- | -1.09 | -- | 1.31 | -0.609 | -- | 22.45 | 1184 | -- | -- |
| 78.68 | 0.416 | 9.52 | -1.15 | 0.321 | -- | -0.703 | -- | -0.399 | 5.01 | -- | -- | -- | -- |
| 79.93 | 0.419 | 9.52 | -1.15 | 0.316 | -- | -- | -- | -0.396 | 4.83 | -- | -- | -- | -- |
| 65.93 | 0.378 | 9.56 | -1.52 | -- | -1.44 | -- | -- | -0.575 | -- | 21.76 | 1200 | -- | -- |
| 110.04 | 0.491 | 9.5 | -- | 0.342 | -0.609 | -- | -- | -0.325 | 4.14 | 22.42 | 946 | -- | -- |
| 85.2 | 0.431 | 9.52 | -1.13 | -- | -- | -- | -- | -0.388 | -- | -- | -- | -- | -- |
| 114.51 | 0.501 | 9.49 | -- | 0.295 | -- | -- | -- | -0.268 | 4.95 | -- | -- | -- | -- |
| 115.82 | 0.501 | 9.51 | -- | -- | -0.456 | -- | -- | -0.329 | -- | 23.17 | 897 | -- | -- |
| 119.11 | 0.509 | 9.49 | -- | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 22 |
| 13 | 60.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 14 | 60.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 16 | 60.22 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 17 | 60.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 22 | 60.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 74 | 60.76 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 14 |
| 87 | 60.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 20 |
| 90 | 60.94 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 10 |
| 97 | 60.97 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 17 |
| 128 | 61.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 129 | 61.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 22 |
| 153 | 61.21 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 167 | 61.23 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 21 |
| 188 | 61.25 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 217 | 61.28 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 229 | 61.29 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 358 | 61.44 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 368 | 61.46 | temperature | 20 | 1440 | < th | dose dependent | sin | 4 | NA |
| 381 | 61.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 385 | 61.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 393 | 61.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 437 | 61.55 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 438 | 61.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 6 |
| 515 | 61.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 536 | 61.67 | temperature | 25 | 1440 | < th | dose dependent | sin | 18 | NA |
| 564 | 61.70 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 598 | 61.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 637 | 61.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 654 | 61.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 4 |
| 694 | 61.84 | humidity | 80 | 14400 | > th | dose dependent | sin | 9 | NA |
| 710 | 61.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 720 | 61.87 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 847 | 61.98 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 888 | 62.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 21 |
| 902 | 62.03 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 21 |
| 982 | 62.10 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 983 | 62.10 | temperature | 20 | 720 | < th | dose dependent | sin | 13 | NA |
| 985 | 62.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 1 |