BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0412500 Os08g0412500|AK062505
(107 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20090.1 | chr5:6787246-6788000 REVERSE LENGTH=111 186 2e-48
AT4G22310.1 | chr4:11791443-11792638 FORWARD LENGTH=109 71 1e-13
AT4G14695.1 | chr4:8419833-8420845 FORWARD LENGTH=110 70 3e-13
AT4G05590.2 | chr4:2907176-2908297 FORWARD LENGTH=147 56 4e-09
>AT5G20090.1 | chr5:6787246-6788000 REVERSE LENGTH=111
Length = 110
Score = 186 bits (473), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 96/105 (91%), Gaps = 1/105 (0%)
Query: 1 MATAA-KAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAAMCVYSGLF 59
MAT+ +AF NSP+GP+TTHFWGP+ANWGFV AGLVDM KPPEMISGNM++AMCVYS LF
Sbjct: 1 MATSRFQAFLNSPIGPKTTHFWGPIANWGFVAAGLVDMQKPPEMISGNMSSAMCVYSALF 60
Query: 60 MRFAWMVQPRNYLLLACHASNESVQLYQFSRWARAQGYLENKEPE 104
MRFAWMVQPRNYLLLACHASNE+VQLYQ SRWARAQGYL +K+ E
Sbjct: 61 MRFAWMVQPRNYLLLACHASNETVQLYQLSRWARAQGYLSSKKEE 105
>AT4G22310.1 | chr4:11791443-11792638 FORWARD LENGTH=109
Length = 108
Score = 70.9 bits (172), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 1 MATAA-KAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAAMCVYSGLF 59
MAT+ +A WN P GP+T HFW P WG +A + D KPPE +S A+ ++
Sbjct: 1 MATSKLQAIWNHPAGPKTIHFWAPTFKWGISIANIADFAKPPEKLSYPQQIAVTCTGVIW 60
Query: 60 MRFAWMVQPRNYLLLACHASNESVQLYQFSRWARAQGYLENKEP 103
R++ ++ P+N+ L + + + +YQ +R + Y EP
Sbjct: 61 SRYSMVINPKNWNLFSVNVAMAGTGIYQLARKIK-HDYATEAEP 103
>AT4G14695.1 | chr4:8419833-8420845 FORWARD LENGTH=110
Length = 109
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MATAA-KAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAAMCVYSGLF 59
MAT+ +A WN P GP+T HFW P WG +A + D KPPE IS A+ ++
Sbjct: 1 MATSKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFQKPPENISYLQQIAVTCTGMIW 60
Query: 60 MRFAWMVQPRNYLLLACHASNESVQLYQFSR 90
R + ++ P+N+ L + + + + +YQ +R
Sbjct: 61 CRCSTIITPKNWNLFSVNVAMAATGIYQLTR 91
>AT4G05590.2 | chr4:2907176-2908297 FORWARD LENGTH=147
Length = 146
Score = 55.8 bits (133), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 1 MATAA-KAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAAMCVYSGL 58
MAT+ +A WN P GP+T HFW P WG +A + D KPPE +S + + GL
Sbjct: 1 MATSKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFQKPPETLSYPQQIGIILTIGL 59
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.132 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,458,984
Number of extensions: 86527
Number of successful extensions: 136
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 4
Length of query: 107
Length of database: 11,106,569
Length adjustment: 76
Effective length of query: 31
Effective length of database: 9,022,953
Effective search space: 279711543
Effective search space used: 279711543
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 105 (45.1 bits)