BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0412500 Os08g0412500|AK062505
         (107 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0412500  Protein of unknown function UPF0041 family pro...   226   4e-60
Os09g0373000  Similar to Brain protein 44-like protein (PNAS...   213   2e-56
Os08g0344300  Protein of unknown function UPF0041 family pro...    81   2e-16
Os07g0449100  Similar to Light induced protein like                81   2e-16

>Os08g0412500 Protein of unknown function UPF0041 family protein
          Length = 107

 Score =  226 bits (575), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MATAAKAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAAMCVYSGLFM 60
           MATAAKAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAAMCVYSGLFM
Sbjct: 1   MATAAKAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAAMCVYSGLFM 60

Query: 61  RFAWMVQPRNYLLLACHASNESVQLYQFSRWARAQGYLENKEPEGQQ 107
           RFAWMVQPRNYLLLACHASNESVQLYQFSRWARAQGYLENKEPEGQQ
Sbjct: 61  RFAWMVQPRNYLLLACHASNESVQLYQFSRWARAQGYLENKEPEGQQ 107



>Os09g0373000 Similar to Brain protein 44-like protein (PNAS-115)
          Length = 107

 Score =  213 bits (542), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/107 (93%), Positives = 102/107 (95%)

Query: 1   MATAAKAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAAMCVYSGLFM 60
           M+TA KAF NSPVGP+TTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAAMCVYSGLFM
Sbjct: 1   MSTAVKAFLNSPVGPKTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAAMCVYSGLFM 60

Query: 61  RFAWMVQPRNYLLLACHASNESVQLYQFSRWARAQGYLENKEPEGQQ 107
           RFAWMVQPRNYLLLACHASNESVQLYQ SRWARAQGYLE KEPE QQ
Sbjct: 61  RFAWMVQPRNYLLLACHASNESVQLYQMSRWARAQGYLEKKEPEAQQ 107



>Os08g0344300 Protein of unknown function UPF0041 family protein
          Length = 109

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 56/102 (54%)

Query: 1   MATAAKAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAAMCVYSGLFM 60
           MA+  +AFWN P GP+T HFW P   WG  +A + D  KPPE IS     A+     ++ 
Sbjct: 1   MASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWS 60

Query: 61  RFAWMVQPRNYLLLACHASNESVQLYQFSRWARAQGYLENKE 102
           R++ ++ P+N+ L + + +     LYQ SR  R   + + K+
Sbjct: 61  RYSMVITPKNWNLFSVNVAMAGTGLYQLSRKIRKDYFSDQKD 102



>Os07g0449100 Similar to Light induced protein like
          Length = 109

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 56/102 (54%)

Query: 1   MATAAKAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAAMCVYSGLFM 60
           MA+  +AFWN P GP+T HFW P   WG  +A + D  KPPE IS     A+     ++ 
Sbjct: 1   MASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWS 60

Query: 61  RFAWMVQPRNYLLLACHASNESVQLYQFSRWARAQGYLENKE 102
           R++ ++ P+N+ L + + +     LYQ SR  R   + + K+
Sbjct: 61  RYSMVITPKNWNLFSVNVAMAGTGLYQLSRKIRKDYFSDEKD 102



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.132    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,979,438
Number of extensions: 139669
Number of successful extensions: 331
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 5
Length of query: 107
Length of database: 17,035,801
Length adjustment: 75
Effective length of query: 32
Effective length of database: 13,119,751
Effective search space: 419832032
Effective search space used: 419832032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)