BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0190700 Os08g0190700|Os08g0190700
(675 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0190700 Conserved hypothetical protein 1188 0.0
Os04g0625000 Conserved hypothetical protein 262 5e-70
Os07g0102200 Conserved hypothetical protein 110 4e-24
Os04g0382850 Conserved hypothetical protein 102 1e-21
Os02g0260500 Conserved hypothetical protein 88 2e-17
Os05g0498500 Hypothetical protein 71 3e-12
>Os08g0190700 Conserved hypothetical protein
Length = 675
Score = 1188 bits (3073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/675 (88%), Positives = 594/675 (88%)
Query: 1 MPRSSTTXXXXXXXXXXXXXKTPLXXXXXXXXXXXXXGLPRGGGPGTPHLRWXXXXXXXX 60
MPRSSTT KTPL GLPRGGGPGTPHLRW
Sbjct: 1 MPRSSTTRPAAPVRLRRRPLKTPLVVAAAAASSSAAVGLPRGGGPGTPHLRWGAGEREEE 60
Query: 61 XXXXXXXXXXXXPGXXXXXXXXXXXXXXXXXXXXXXXXSRHAADRACLEHIPRHLQVQLL 120
PG SRHAADRACLEHIPRHLQVQLL
Sbjct: 61 ENGGEKGNAVGAPGRRSVRRLAAAVWRLRPAEEAPPPASRHAADRACLEHIPRHLQVQLL 120
Query: 121 RKDHVSTRYGLKNETSSPISVLERHSGELHKGQLHLASDVLPITSLENVTKWEPDGIEGI 180
RKDHVSTRYGLKNETSSPISVLERHSGELHKGQLHLASDVLPITSLENVTKWEPDGIEGI
Sbjct: 121 RKDHVSTRYGLKNETSSPISVLERHSGELHKGQLHLASDVLPITSLENVTKWEPDGIEGI 180
Query: 181 ESDGAYVIASQLNLIEEQKGENYVSNLQVELQQTRDRVGKLEAERISAKKQLDHLFKKLT 240
ESDGAYVIASQLNLIEEQKGENYVSNLQVELQQTRDRVGKLEAERISAKKQLDHLFKKLT
Sbjct: 181 ESDGAYVIASQLNLIEEQKGENYVSNLQVELQQTRDRVGKLEAERISAKKQLDHLFKKLT 240
Query: 241 EEKAAWRKREHKKVQAILEDMKADLEHEKKNRRQLEKINIKLVDELKEVKMAANNLLQEY 300
EEKAAWRKREHKKVQAILEDMKADLEHEKKNRRQLEKINIKLVDELKEVKMAANNLLQEY
Sbjct: 241 EEKAAWRKREHKKVQAILEDMKADLEHEKKNRRQLEKINIKLVDELKEVKMAANNLLQEY 300
Query: 301 DNERKTRELTEEVCTKLVRELEEHKAEIEGLKQDSLKLRAEVDEDRKLLQMAEVWREERV 360
DNERKTRELTEEVCTKLVRELEEHKAEIEGLKQDSLKLRAEVDEDRKLLQMAEVWREERV
Sbjct: 301 DNERKTRELTEEVCTKLVRELEEHKAEIEGLKQDSLKLRAEVDEDRKLLQMAEVWREERV 360
Query: 361 QMKLVDAKLTLEAKYEELSKLQLDVEAIIASFSDTKGDDTIVQTAKNILQSIESTREQEI 420
QMKLVDAKLTLEAKYEELSKLQLDVEAIIASFSDTKGDDTIVQTAKNILQSIESTREQEI
Sbjct: 361 QMKLVDAKLTLEAKYEELSKLQLDVEAIIASFSDTKGDDTIVQTAKNILQSIESTREQEI 420
Query: 421 KFTYEPPPASDDILAIIEELRPSEELETRETEPCHKHNSPVHESENQQDSPMTDIFLENP 480
KFTYEPPPASDDILAIIEELRPSEELETRETEPCHKHNSPVHESENQQDSPMTDIFLENP
Sbjct: 421 KFTYEPPPASDDILAIIEELRPSEELETRETEPCHKHNSPVHESENQQDSPMTDIFLENP 480
Query: 481 TKLYSNRSHYNESDMGDSSSWETISNEEMQGXXXXXXXXXXXVNKICDKISWTSGDDSEA 540
TKLYSNRSHYNESDMGDSSSWETISNEEMQG VNKICDKISWTSGDDSEA
Sbjct: 481 TKLYSNRSHYNESDMGDSSSWETISNEEMQGSSSSRNGSEPSVNKICDKISWTSGDDSEA 540
Query: 541 GQNDNLSGELSKAYFADRKPSKKKESAISKFWKSSPLKNCEIFKIDVVEMMNRRSSNERL 600
GQNDNLSGELSKAYFADRKPSKKKESAISKFWKSSPLKNCEIFKIDVVEMMNRRSSNERL
Sbjct: 541 GQNDNLSGELSKAYFADRKPSKKKESAISKFWKSSPLKNCEIFKIDVVEMMNRRSSNERL 600
Query: 601 SNGMHSSNEGANQDAGLSSPSIGQWSSPDSMNSQLNRGFRGCMELVQKQSLKAKLLEARM 660
SNGMHSSNEGANQDAGLSSPSIGQWSSPDSMNSQLNRGFRGCMELVQKQSLKAKLLEARM
Sbjct: 601 SNGMHSSNEGANQDAGLSSPSIGQWSSPDSMNSQLNRGFRGCMELVQKQSLKAKLLEARM 660
Query: 661 ESQKIQLRHVLNQKT 675
ESQKIQLRHVLNQKT
Sbjct: 661 ESQKIQLRHVLNQKT 675
>Os04g0625000 Conserved hypothetical protein
Length = 175
Score = 262 bits (670), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 134/175 (76%), Positives = 153/175 (87%)
Query: 236 FKKLTEEKAAWRKREHKKVQAILEDMKADLEHEKKNRRQLEKINIKLVDELKEVKMAANN 295
FKKL EEKAAWR REH+KV+AILEDMKADL+HEKKNRR+LE IN+KLV+ELKE KM+A
Sbjct: 1 FKKLAEEKAAWRSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQ 60
Query: 296 LLQEYDNERKTRELTEEVCTKLVRELEEHKAEIEGLKQDSLKLRAEVDEDRKLLQMAEVW 355
LLQEYDNERK RELTEEVC +L RE+EE KAEIE LK DSLKLR EVDE+RK+LQMAEVW
Sbjct: 61 LLQEYDNERKARELTEEVCNELAREVEEDKAEIEALKHDSLKLREEVDEERKMLQMAEVW 120
Query: 356 REERVQMKLVDAKLTLEAKYEELSKLQLDVEAIIASFSDTKGDDTIVQTAKNILQ 410
REERVQMKLVDAKLTL+AKY +LSKLQ DVEA IA+ S +GD +V+ A+NI+Q
Sbjct: 121 REERVQMKLVDAKLTLDAKYTQLSKLQQDVEAFIAACSCARGDIMVVEEAENIIQ 175
>Os07g0102200 Conserved hypothetical protein
Length = 537
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 29/235 (12%)
Query: 249 REHKKVQAILEDMKADLEHEKKNRRQLEKINIKLVDELKEVKMAANNLLQEYDNERKTRE 308
R+ +KV + +L+ E+ +RR+LE N KLV E+ + Q + ERK RE
Sbjct: 172 RKLRKVAEEKAAAREELKLERHHRRELEGANGKLVKEVARAR-------QRVETERKARE 224
Query: 309 LTEEVCTKLVRELEEHKAEIEGLKQDSLKLRAEVDEDRKLLQMAEVWREERVQMKLVDAK 368
L EE C +L +E+EE +AE+E L+++ + +R E++E+R++LQMAEVWREERVQMKL DAK
Sbjct: 225 LMEEACEELSKEVEEDQAEVEALRRECVSMREEMEEERRMLQMAEVWREERVQMKLSDAK 284
Query: 369 LTLEAKYEELSKLQLDVEAIIASFSD-TKGDDTIVQTAKNILQSIESTREQEIKF----T 423
LE KY L+ LQ ++E+ + T +T + S+ + F T
Sbjct: 285 AVLEHKYAHLNTLQSEMESFLLRHGHRTHNHAQHRRTVDMLAASVRGANADDGLFPPANT 344
Query: 424 YEPPPASDDILAIIEELRPSEELETRETEPCHKHNSPVHESENQQDSPMTDIFLE 478
Y+ P A DD+ + + R ++N+ ++ + SP TD+FLE
Sbjct: 345 YKSPHAPDDVDKVFDHFR--------------RNNT---DTSSSVASPATDLFLE 382
>Os04g0382850 Conserved hypothetical protein
Length = 314
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 245 AWRKREHKKVQAILEDMKADLEHEKKNRRQLEKINIKLVDELKEVKMAANNLLQEYDNER 304
+W+ ++ +KV L+ + ++L+ EKK+RR+ E+IN KL L + + +E + ER
Sbjct: 3 SWKSKQKEKVANALQYIVSELDSEKKSRRRAERINKKLGMALANTEASLQAATKELERER 62
Query: 305 KTRELTEEVCTKLVRELEEHKAEIEGLKQDSLKLRAEVDEDRKLLQMAEVWREERVQMKL 364
K++ E++CT+L+R + E KAE+E LK+++ K + E+ ++R++LQ+A+ WRE+RVQMKL
Sbjct: 63 KSKGRVEKICTELIRGIGEDKAEVEALKKETEKAQEELQKEREMLQLADEWREQRVQMKL 122
Query: 365 VDAKLTLEAKYEELSKLQLDVEAIIASFSDTKGDDTIVQTAKNILQSIESTRE 417
++A+L E K +++L +++A + DTK + +L++ E+ RE
Sbjct: 123 LEARLQFEEKNAAINQLHDELQAYL----DTKKEHGQSNDQMTLLRASENGRE 171
>Os02g0260500 Conserved hypothetical protein
Length = 711
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 106/186 (56%), Gaps = 2/186 (1%)
Query: 204 VSNLQVELQQTRDRVGKLEAERISAKKQLDHLFKKLTEEKAAWRKREHKKVQAILEDMKA 263
++ L++ELQ ++ + +L+ ER + + L ++L+E+K + ++ +K+ A + ++
Sbjct: 265 INGLKLELQHAQEHIQELKCERRGYRHDVASLVRQLSEDKLVRKNKDKEKIAADIHSLQD 324
Query: 264 DLEHEKKNRRQLEKINIKLVDELKEVKMAANNLLQEYDNERKTRELTEEVCTKLVRELEE 323
+LE E++ RR E ++ K EL E+K A +++ + E+KT+ L E++C + + +
Sbjct: 325 ELEDERRLRRHSEDLHRKFGKELSEIKSAFVKAVKDLEKEKKTKNLLEDLCDQFAMGIRD 384
Query: 324 HKAEIEGLKQDSLKLRAEVDEDRKLLQMAEVWREERVQMKLVDAKLTLEAKYEELSKLQL 383
++ E+ LKQ + E D+ +L ++E W +ER+QM+ D K K +L+
Sbjct: 385 YEEEVRALKQRHVNY--EYQFDKSVLHVSEAWLDERMQMQNTDVKEDSLKKSTITERLRS 442
Query: 384 DVEAII 389
++EA +
Sbjct: 443 EIEAFL 448
>Os05g0498500 Hypothetical protein
Length = 148
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 75/132 (56%), Gaps = 11/132 (8%)
Query: 549 ELSKAYFADRKPSKKKESAISKFWKSSPLKNCEIFKIDVVEMMNRRSSNERLSNGMHSSN 608
E+S+ + +KK S+ + W+SS N + K E++N R S+ R+SN S +
Sbjct: 21 EISEVCSTTAEKYRKKGSSFGRLWRSS---NGDGHKKTGSELLNGRLSSGRMSNAALSPS 77
Query: 609 EGANQDAGLSSPSIGQWSSPDSMNSQLNRGFRGCMEL---VQKQS---LKAKLLEARMES 662
N + SPS+G+WS PD +N + R +GC+E QKQ+ LK+KLLEA+++
Sbjct: 78 L-KNGEVCTVSPSVGEWS-PDLLNPHVVRAMKGCIEWPRGAQKQNTHNLKSKLLEAKLDG 135
Query: 663 QKIQLRHVLNQK 674
K+QLR L QK
Sbjct: 136 HKVQLRQALKQK 147
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.127 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,711,859
Number of extensions: 770670
Number of successful extensions: 3128
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 3114
Number of HSP's successfully gapped: 8
Length of query: 675
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 567
Effective length of database: 11,396,689
Effective search space: 6461922663
Effective search space used: 6461922663
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 159 (65.9 bits)