Os04g0625000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0625000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.43 | 0.482 | 7.3 | 0.753 | 0.416 | -1.55 | -0.167 | -2.47 | 0.137 | 3.12 | 1.14 | 1419 | -- | -- |
| 106.82 | 0.481 | 7.34 | 0.533 | 0.481 | -1.11 | 0.00766 | -- | 0.0722 | 2.43 | 2.866 | 1447 | -- | -- |
| 105.47 | 0.478 | 7.3 | 0.752 | 0.402 | -1.54 | -- | -2.46 | 0.139 | 3.23 | 1.08 | 1412 | -- | -- |
| 106.78 | 0.481 | 7.34 | 0.526 | 0.505 | -1.11 | -- | -- | 0.0661 | 2.25 | 2.88 | 1451 | -- | -- |
| 113.17 | 0.495 | 7.29 | 0.79 | -- | -1.69 | -- | -2.85 | 0.154 | -- | 1.014 | 1388 | -- | -- |
| 122.84 | 0.52 | 7.3 | 0.741 | 0.488 | -- | 0.158 | -- | 0.239 | 2.45 | -- | -- | -- | -- |
| 122.92 | 0.519 | 7.3 | 0.737 | 0.489 | -- | -- | -- | 0.238 | 2.53 | -- | -- | -- | -- |
| 115.67 | 0.501 | 7.35 | 0.559 | -- | -1.19 | -- | -- | 0.069 | -- | 2.978 | 1375 | -- | -- |
| 113.75 | 0.497 | 7.34 | -- | 0.533 | -1.32 | -- | -- | 0.0533 | 2.08 | 2.413 | 1460 | -- | -- |
| 136.98 | 0.547 | 7.3 | 0.758 | -- | -- | -- | -- | 0.25 | -- | -- | -- | -- | -- |
| 137.24 | 0.548 | 7.32 | -- | 0.504 | -- | -- | -- | 0.156 | 2.55 | -- | -- | -- | -- |
| 122.29 | 0.515 | 7.36 | -- | -- | -1.4 | -- | -- | 0.00301 | -- | 2.438 | 1380 | -- | -- |
| 152.13 | 0.576 | 7.32 | -- | -- | -- | -- | -- | 0.166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.50 | wind | 9 | 14400 | < th | dose independent | rect. | 7 | 6 |
| 2 | 97.54 | wind | 9 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 4 | 97.65 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 8 | 97.75 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 11 | 97.99 | wind | 9 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 17 | 98.38 | wind | 9 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 20 | 98.39 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 28 | 98.91 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 34 | 99.45 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 36 | 99.54 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 37 | 99.56 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 38 | 99.56 | wind | 9 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 50 | 99.70 | temperature | 20 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 58 | 99.84 | temperature | 20 | 14400 | < th | dose dependent | rect. | 24 | 16 |
| 84 | 99.98 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 103 | 100.07 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 106 | 100.08 | temperature | 20 | 14400 | < th | dose dependent | sin | 4 | NA |
| 142 | 100.16 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 16 |
| 171 | 100.22 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 172 | 100.22 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 16 |
| 187 | 100.24 | temperature | 20 | 14400 | < th | dose dependent | rect. | 9 | 22 |
| 200 | 100.26 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 205 | 100.27 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 213 | 100.28 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 5 |
| 214 | 100.28 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 225 | 100.29 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 11 |
| 260 | 100.32 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 11 |
| 382 | 100.44 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 411 | 100.47 | temperature | 20 | 14400 | < th | dose independent | sin | 5 | NA |
| 458 | 100.52 | temperature | 20 | 14400 | > th | dose independent | sin | 5 | NA |
| 549 | 100.63 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 587 | 100.69 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 724 | 101.01 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 790 | 101.18 | wind | 9 | 14400 | > th | dose dependent | sin | 4 | NA |
| 797 | 101.19 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 804 | 101.21 | temperature | 20 | 14400 | < th | dose independent | rect. | 12 | 20 |
| 821 | 101.24 | temperature | 15 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 876 | 101.33 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 938 | 101.42 | temperature | 20 | 14400 | > th | dose independent | rect. | 12 | 20 |
| 948 | 101.44 | temperature | 20 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 993 | 101.51 | wind | 9 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 996 | 101.52 | temperature | 20 | 14400 | > th | dose independent | rect. | 17 | 15 |