BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0625000 Os04g0625000|AY224500
(175 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0625000 Conserved hypothetical protein 338 1e-93
Os08g0190700 Conserved hypothetical protein 263 6e-71
Os04g0382850 Conserved hypothetical protein 113 7e-26
Os07g0102200 Conserved hypothetical protein 108 2e-24
Os02g0260500 Conserved hypothetical protein 64 4e-11
>Os04g0625000 Conserved hypothetical protein
Length = 175
Score = 338 bits (867), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 FKKLAEEKAAWRSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQ 60
FKKLAEEKAAWRSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQ
Sbjct: 1 FKKLAEEKAAWRSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQ 60
Query: 61 LLQEYDNERKARELTEEVCNELAREVEEDKAEIEALKHDSLKLREEVDEERKMLQMAEVW 120
LLQEYDNERKARELTEEVCNELAREVEEDKAEIEALKHDSLKLREEVDEERKMLQMAEVW
Sbjct: 61 LLQEYDNERKARELTEEVCNELAREVEEDKAEIEALKHDSLKLREEVDEERKMLQMAEVW 120
Query: 121 REERVQMKLVDAKLTLDAKYTQLSKLQQDVEAFIAACSCARGDIMVVEEAENIIQ 175
REERVQMKLVDAKLTLDAKYTQLSKLQQDVEAFIAACSCARGDIMVVEEAENIIQ
Sbjct: 121 REERVQMKLVDAKLTLDAKYTQLSKLQQDVEAFIAACSCARGDIMVVEEAENIIQ 175
>Os08g0190700 Conserved hypothetical protein
Length = 675
Score = 263 bits (671), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 134/175 (76%), Positives = 153/175 (87%)
Query: 1 FKKLAEEKAAWRSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQ 60
FKKL EEKAAWR REH+KV+AILEDMKADL+HEKKNRR+LE IN+KLV+ELKE KM+A
Sbjct: 236 FKKLTEEKAAWRKREHKKVQAILEDMKADLEHEKKNRRQLEKINIKLVDELKEVKMAANN 295
Query: 61 LLQEYDNERKARELTEEVCNELAREVEEDKAEIEALKHDSLKLREEVDEERKMLQMAEVW 120
LLQEYDNERK RELTEEVC +L RE+EE KAEIE LK DSLKLR EVDE+RK+LQMAEVW
Sbjct: 296 LLQEYDNERKTRELTEEVCTKLVRELEEHKAEIEGLKQDSLKLRAEVDEDRKLLQMAEVW 355
Query: 121 REERVQMKLVDAKLTLDAKYTQLSKLQQDVEAFIAACSCARGDIMVVEEAENIIQ 175
REERVQMKLVDAKLTL+AKY +LSKLQ DVEA IA+ S +GD +V+ A+NI+Q
Sbjct: 356 REERVQMKLVDAKLTLEAKYEELSKLQLDVEAIIASFSDTKGDDTIVQTAKNILQ 410
>Os04g0382850 Conserved hypothetical protein
Length = 314
Score = 113 bits (283), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 102/145 (70%)
Query: 10 AWRSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQLLQEYDNER 69
+W+S++ EKV L+ + ++LD EKK+RRR E IN KL L + S + +E + ER
Sbjct: 3 SWKSKQKEKVANALQYIVSELDSEKKSRRRAERINKKLGMALANTEASLQAATKELERER 62
Query: 70 KARELTEEVCNELAREVEEDKAEIEALKHDSLKLREEVDEERKMLQMAEVWREERVQMKL 129
K++ E++C EL R + EDKAE+EALK ++ K +EE+ +ER+MLQ+A+ WRE+RVQMKL
Sbjct: 63 KSKGRVEKICTELIRGIGEDKAEVEALKKETEKAQEELQKEREMLQLADEWREQRVQMKL 122
Query: 130 VDAKLTLDAKYTQLSKLQQDVEAFI 154
++A+L + K +++L +++A++
Sbjct: 123 LEARLQFEEKNAAINQLHDELQAYL 147
>Os07g0102200 Conserved hypothetical protein
Length = 537
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 90/122 (73%), Gaps = 7/122 (5%)
Query: 33 EKKNRRRLEMINLKLVNELKEAKMSAKQLLQEYDNERKARELTEEVCNELAREVEEDKAE 92
E+ +RR LE N KLV E+ A+ Q + ERKAREL EE C EL++EVEED+AE
Sbjct: 191 ERHHRRELEGANGKLVKEVARAR-------QRVETERKARELMEEACEELSKEVEEDQAE 243
Query: 93 IEALKHDSLKLREEVDEERKMLQMAEVWREERVQMKLVDAKLTLDAKYTQLSKLQQDVEA 152
+EAL+ + + +REE++EER+MLQMAEVWREERVQMKL DAK L+ KY L+ LQ ++E+
Sbjct: 244 VEALRRECVSMREEMEEERRMLQMAEVWREERVQMKLSDAKAVLEHKYAHLNTLQSEMES 303
Query: 153 FI 154
F+
Sbjct: 304 FL 305
>Os02g0260500 Conserved hypothetical protein
Length = 711
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Query: 2 KKLAEEKAAWRSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQL 61
++L+E+K ++++ EK+ A + ++ +L+ E++ RR E ++ K EL E K + +
Sbjct: 298 RQLSEDKLVRKNKDKEKIAADIHSLQDELEDERRLRRHSEDLHRKFGKELSEIKSAFVKA 357
Query: 62 LQEYDNERKARELTEEVCNELAREVEEDKAEIEALKHDSLKLREEVDEERKMLQMAEVWR 121
+++ + E+K + L E++C++ A + + + E+ ALK + + D + +L ++E W
Sbjct: 358 VKDLEKEKKTKNLLEDLCDQFAMGIRDYEEEVRALKQRHVNYEYQFD--KSVLHVSEAWL 415
Query: 122 EERVQMKLVDAKLTLDAKYTQLSKLQQDVEAFIAA 156
+ER+QM+ D K K T +L+ ++EAF+ A
Sbjct: 416 DERMQMQNTDVKEDSLKKSTITERLRSEIEAFLLA 450
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.127 0.335
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,864,777
Number of extensions: 174759
Number of successful extensions: 1559
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1550
Number of HSP's successfully gapped: 8
Length of query: 175
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 81
Effective length of database: 12,127,685
Effective search space: 982342485
Effective search space used: 982342485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 152 (63.2 bits)