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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0102200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.84 (0.0451) R2 : 0.564
β1 : -1.46 (0.187) R2dD : 0.0841 R2D : 0.152
β2 : 0.836 (0.116) R2dC : 0.0499 R2C : 0.0405
β3 : 0.76 (0.177) R2dE : 0.021 R2E : 0.0733
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.97 (0.544) R2dD*E : 0.159 R2D*E : 0.284
γ1 : -0.9 (0.1) R2dN8 : 0.12 R2N8 : 0.104
σ : 0.817
deviance : 307.5
__
_____
C
peak time of C : 4.57
E
wheather : temperature
threshold : 20.7
memory length : 412
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 2.88
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
309.47 0.827 3.86 -1.63 0.867 0.76 -1.05 -5.49 -0.956 4.4 20.59 425 1.99 --
365.81 0.891 3.95 -2.39 0.95 0.862 -2.94 -- -1.14 5.29 19.58 743 3.26 --
307.5 0.817 3.84 -1.46 0.836 0.76 -- -5.97 -0.9 4.57 20.7 412 2.88 --
382.71 0.911 3.94 -2.36 0.896 1.09 -- -- -1.13 4.44 19.3 590 3.12 --
339.9 0.859 3.83 -1.39 -- 1.07 -- -6.08 -0.829 -- 20.8 407 3.15 --
378.45 0.912 3.97 -2.61 0.976 -- -3.28 -- -1.29 5.65 -- -- -- --
403.59 0.941 3.97 -2.63 0.965 -- -- -- -1.28 5.09 -- -- -- --
421.32 0.956 3.93 -2.28 -- 1.5 -- -- -1.04 -- 19.41 433 3.43 --
516.81 1.06 3.89 -- 0.905 1.87 -- -- -0.813 4.09 19.31 590 3.06 --
452.38 0.994 3.98 -2.6 -- -- -- -- -1.25 -- -- -- -- --
585.84 1.13 3.9 -- 0.919 -- -- -- -0.985 5.19 -- -- -- --
546.79 1.09 3.86 -- -- 2.47 -- -- -0.742 -- 19.01 473 4.05 --
630.03 1.17 3.91 -- -- -- -- -- -0.966 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 309.44 temperature 25 270 < th dose dependent rect. 23 10
2 311.33 wind 1 14400 > th dose independent rect. 23 3
5 314.62 temperature 20 270 < th dose independent rect. 24 9
6 314.73 wind 1 14400 > th dose independent sin 13 NA
8 314.78 wind 1 14400 < th dose independent rect. 22 4
11 315.26 temperature 10 43200 > th dose independent rect. 8 5
12 315.28 wind 1 14400 > th dose independent rect. 20 8
14 315.88 wind 1 14400 < th dose independent sin 14 NA
23 316.74 wind 1 14400 > th dose independent rect. 17 11
29 318.47 wind 1 14400 < th dose independent rect. 17 11
31 318.78 wind 1 14400 < th dose independent rect. 20 8
44 319.93 temperature 20 720 < th dose independent rect. 22 5
50 320.36 temperature 10 43200 > th dose independent rect. 8 9
58 321.05 temperature 10 43200 > th dose independent rect. 8 11
64 321.35 temperature 20 270 > th dose dependent rect. 22 11
69 321.72 temperature 20 720 > th dose dependent rect. 21 6
71 321.86 wind 1 14400 > th dose independent rect. 14 15
75 322.01 wind 1 14400 < th dose independent rect. 14 15
77 322.06 wind 1 14400 > th dose independent rect. 17 16
86 322.53 wind 1 14400 < th dose dependent sin 14 NA
88 322.63 wind 1 14400 < th dose dependent rect. 16 16
113 323.33 wind 1 14400 < th dose dependent rect. 16 13
118 323.48 temperature 20 270 > th dose dependent sin 8 NA
127 323.78 wind 1 14400 > th dose independent rect. 19 14
137 324.12 temperature 20 720 > th dose independent rect. 21 8
148 324.38 wind 3 14400 < th dose dependent rect. 22 2
149 324.38 wind 3 14400 < th dose dependent rect. 21 5
152 324.44 temperature 20 720 > th dose dependent rect. 18 14
160 324.72 wind 3 14400 < th dose dependent rect. 19 7
167 324.85 wind 1 14400 > th dose independent rect. 14 19
183 325.14 temperature 20 720 > th dose independent rect. 22 5
197 325.25 wind 1 14400 > th dose independent rect. 17 19
206 325.41 wind 1 14400 > th dose independent rect. 19 17
208 325.63 temperature 15 14400 < th dose dependent rect. 6 13
232 325.91 temperature 25 720 < th dose dependent rect. 23 2
236 325.93 temperature 25 720 < th dose dependent rect. 22 4
240 325.97 temperature 10 43200 < th dose independent rect. 8 14
247 326.02 wind 1 14400 > th dose independent rect. 11 20
249 326.02 wind 1 14400 < th dose dependent rect. 10 22
250 326.07 temperature 15 14400 < th dose independent rect. 6 3
254 326.09 wind 1 14400 > th dose independent rect. 11 22
255 326.09 temperature 15 14400 < th dose dependent rect. 6 2
257 326.10 temperature 30 720 < th dose dependent rect. 20 7
279 326.32 temperature 10 43200 < th dose independent rect. 20 2
306 326.49 temperature 15 14400 > th dose independent rect. 16 1
308 326.51 temperature 10 43200 > th dose independent rect. 9 1
340 326.80 wind 3 14400 < th dose dependent rect. 7 2
357 326.94 temperature 15 14400 < th dose independent rect. 16 1
374 327.00 temperature 10 43200 < th dose dependent rect. 19 2
424 327.39 wind 9 14400 > th dose independent rect. 24 1
431 327.39 humidity 60 43200 < th dose independent rect. 2 1
461 327.39 wind 9 14400 > th dose dependent rect. 24 1
468 327.39 humidity 60 43200 < th dose dependent rect. 2 1
499 327.43 temperature 20 720 > th dose dependent sin 11 NA
559 327.79 wind 3 14400 < th dose independent rect. 8 1
586 327.94 wind 1 14400 > th dose independent rect. 17 22
590 327.97 temperature 15 14400 > th dose independent rect. 12 5
611 328.10 temperature 15 14400 > th dose independent rect. 11 10
639 328.19 wind 1 14400 < th dose dependent rect. 16 20
665 328.37 wind 1 14400 > th dose independent rect. 14 22
668 328.38 temperature 10 43200 < th dose independent sin 20 NA
669 328.38 wind 1 14400 < th dose independent rect. 10 21
688 328.49 temperature 15 14400 > th dose independent rect. 15 7
707 328.58 temperature 15 14400 > th dose independent sin 21 NA
715 328.60 temperature 15 14400 < th dose dependent sin 22 NA
723 328.63 temperature 20 270 < th dose independent sin 7 NA
757 328.75 wind 1 14400 < th dose independent rect. 17 19
843 329.03 temperature 15 14400 < th dose independent rect. 12 5
846 329.04 wind 1 14400 < th dose independent rect. 19 17
874 329.14 temperature 15 14400 < th dose dependent rect. 17 1
905 329.28 temperature 30 270 < th dose dependent sin 8 NA
917 329.33 wind 1 14400 < th dose independent rect. 19 13
955 329.48 temperature 15 14400 > th dose independent rect. 12 2
959 329.50 temperature 10 43200 > th dose independent rect. 21 4