BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0102200 Os07g0102200|AK121572
(537 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G50660.1 | chr1:18771386-18774385 FORWARD LENGTH=726 122 5e-28
AT3G20350.1 | chr3:7096602-7099372 FORWARD LENGTH=674 117 1e-26
AT3G11590.1 | chr3:3660628-3663537 FORWARD LENGTH=623 84 3e-16
AT5G22310.1 | chr5:7383742-7385345 REVERSE LENGTH=482 63 4e-10
AT1G11690.1 | chr1:3941469-3942212 FORWARD LENGTH=248 58 1e-08
>AT1G50660.1 | chr1:18771386-18774385 FORWARD LENGTH=726
Length = 725
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 97/171 (56%), Gaps = 19/171 (11%)
Query: 201 ANGKLVKEVA-------RARQRVETERKARELMEEACEELSKEVEEDQAEVEALRRECVS 253
N KLV E+A R Q E ERKAREL+EE C+EL+KE+ ED+AE+EAL+RE +S
Sbjct: 313 VNHKLVNELADSKLAVKRYMQDYEKERKARELIEEVCDELAKEIGEDKAEIEALKRESMS 372
Query: 254 XXXXXXXXXXXLQMAEVWREERVQMKLSDAKAVLEHKYAHLNTLQSEMESFLLRHGHRTH 313
LQMAEVWREERVQMKL DAK LE +Y+ +N L ++ESFL T
Sbjct: 373 LREEVDDERRMLQMAEVWREERVQMKLIDAKVALEERYSQMNKLVGDLESFLRSRDIVT- 431
Query: 314 NHAQHRRTVDML---AASVRGANADDGLFPPANTYKSPHAPDDVDKVFDHF 361
+ R ++L AASV + + PAN PDD+ VF+
Sbjct: 432 -DVKEVREAELLRETAASVNIQEIKEFTYVPAN-------PDDIYAVFEEM 474
>AT3G20350.1 | chr3:7096602-7099372 FORWARD LENGTH=674
Length = 673
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 98/168 (58%), Gaps = 13/168 (7%)
Query: 201 ANGKLVKEVARARQRV-------ETERKARELMEEACEELSKEVEEDQAEVEALRRECVS 253
N KLV E+A ++ V + ERKAREL+EE C+EL+KE+EED+AE+EAL+ E ++
Sbjct: 290 VNSKLVNELADSKLAVKRYMHDYQQERKARELIEEVCDELAKEIEEDKAEIEALKSESMN 349
Query: 254 XXXXXXXXXXXLQMAEVWREERVQMKLSDAKAVLEHKYAHLNTLQSEMESFLLRHGHRTH 313
LQMAEVWREERVQMKL DAK LE KY+ +N L +ME+FL R
Sbjct: 350 LREEVDDERRMLQMAEVWREERVQMKLIDAKVTLEEKYSQMNKLVGDMEAFL---SSRNT 406
Query: 314 NHAQHRRTVDMLAASVRGANADDGLFPPANTYKSPHAPDDVDKVFDHF 361
+ R ++L + A+ D+ TY+ P PDD+ +F+
Sbjct: 407 TGVKEVRVAELLRET--AASVDNIQEIKEFTYE-PAKPDDILMLFEQM 451
>AT3G11590.1 | chr3:3660628-3663537 FORWARD LENGTH=623
Length = 622
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 73/111 (65%), Gaps = 7/111 (6%)
Query: 202 NGKLVKEVA-------RARQRVETERKARELMEEACEELSKEVEEDQAEVEALRRECVSX 254
N KL KE+A +A + +E E++AR ++E+ C+EL++++ ED+AEVE L+RE
Sbjct: 332 NKKLGKELAETKSALMKAVKEIENEKRARVMVEKVCDELARDISEDKAEVEELKRESFKV 391
Query: 255 XXXXXXXXXXLQMAEVWREERVQMKLSDAKAVLEHKYAHLNTLQSEMESFL 305
LQ+A+ REERVQMKLS+AK LE K A ++ L+++++++L
Sbjct: 392 KEEVEKEREMLQLADALREERVQMKLSEAKHQLEEKNAAVDKLRNQLQTYL 442
>AT5G22310.1 | chr5:7383742-7385345 REVERSE LENGTH=482
Length = 481
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 72/126 (57%), Gaps = 18/126 (14%)
Query: 211 RARQRVETERKARELMEEACEELSKEVEEDQAEVEALRRECVSXXXXXXXXXXXLQMAEV 270
+ ++ ++ E++A++++EE C+EL+K + +D+ E+E R + +A+V
Sbjct: 283 KMKEEMKREKRAKDVLEEVCDELTKGIGDDKKEMEKER--------------EMMHIADV 328
Query: 271 WREERVQMKLSDAKAVLEHKYAHLNTLQSEMESFLLRHGHRTHNHAQHRRTVDMLAASVR 330
REERVQMKL++AK E KYA + L+ E+ L G ++ RR ++++ S
Sbjct: 329 LREERVQMKLTEAKFEFEDKYAAVERLKKELRRVL--DGEEGKGSSEIRRILEVIDGS-- 384
Query: 331 GANADD 336
G++ D+
Sbjct: 385 GSDDDE 390
>AT1G11690.1 | chr1:3941469-3942212 FORWARD LENGTH=248
Length = 247
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 200 GANGKLVKEVARARQRVETERKARELMEEACEELSKEVEEDQAEVEALRRECVSXXXXXX 259
N +L K++ V R+ R+ ME+ CEEL + D+ +V R
Sbjct: 101 AENSRLKKKILDMESSVNRLRRERDTMEKVCEELVTRI--DELKVNTRR-----VWDETE 153
Query: 260 XXXXXLQMAEVWREERVQMKLSDAKAVLEHKYAHLNTLQSEMESFL-------------L 306
LQMAE+WREERV++K DAK L+ KY +N E+E L L
Sbjct: 154 EERQMLQMAEMWREERVRVKFMDAKLALQEKYEEMNLFVVELEKCLETAREVGGIEEKRL 213
Query: 307 RHGHRTHNHAQHRRTVD 323
RHG A+ VD
Sbjct: 214 RHGEGLIKMAKSMEVVD 230
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.125 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,669,516
Number of extensions: 240167
Number of successful extensions: 1134
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1132
Number of HSP's successfully gapped: 6
Length of query: 537
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 434
Effective length of database: 8,282,721
Effective search space: 3594700914
Effective search space used: 3594700914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)