BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0102200 Os07g0102200|AK121572
(537 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0102200 Conserved hypothetical protein 676 0.0
Os04g0625000 Conserved hypothetical protein 101 2e-21
Os08g0190700 Conserved hypothetical protein 98 2e-20
Os04g0382850 Conserved hypothetical protein 74 4e-13
>Os07g0102200 Conserved hypothetical protein
Length = 537
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/537 (69%), Positives = 372/537 (69%)
Query: 1 MIPSXXXXXXXXXXXXXXNVAAGKAPPLVASSVTXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MIPS NVAAGKAPPLVASSVT
Sbjct: 1 MIPSAPRRTACPCRSRRRNVAAGKAPPLVASSVTARALAAGLWRLRQAERSAAAAARRQD 60
Query: 61 XXXXPSLLGVGGRKGKAPSEIHFGIGRKQQCCRSHGNGNGILDKIEXXXXXXXXXXGSME 120
PSLLGVGGRKGKAPSEIHFGIGRKQQCCRSHGNGNGILDKIE GSME
Sbjct: 61 NQPRPSLLGVGGRKGKAPSEIHFGIGRKQQCCRSHGNGNGILDKIEAACSSSYSYCGSME 120
Query: 121 KATKWDNGKKQSLVKKEIGSSSSRRMRSLENALEKARAEIVEMEEEKRLMSXXXXXXXXX 180
KATKWDNGKKQSLVKKEIGSSSSRRMRSLENALEKARAEIVEMEEEKRLMS
Sbjct: 121 KATKWDNGKKQSLVKKEIGSSSSRRMRSLENALEKARAEIVEMEEEKRLMSRKLRKVAEE 180
Query: 181 XXXXXXXXXXXXXXXXXXXGANGKLVKEVARARQRVETERKARELMEEACEELSKEVEED 240
GANGKLVKEVARARQRVETERKARELMEEACEELSKEVEED
Sbjct: 181 KAAAREELKLERHHRRELEGANGKLVKEVARARQRVETERKARELMEEACEELSKEVEED 240
Query: 241 QAEVEALRRECVSXXXXXXXXXXXLQMAEVWREERVQMKLSDAKAVLEHKYAHLNTLQSE 300
QAEVEALRRECVS LQMAEVWREERVQMKLSDAKAVLEHKYAHLNTLQSE
Sbjct: 241 QAEVEALRRECVSMREEMEEERRMLQMAEVWREERVQMKLSDAKAVLEHKYAHLNTLQSE 300
Query: 301 MESFLLRHGHRTHNHAQHRRTVDMLAASVRGANADDGLFPPANTYKSPHAPDDVDKVFDH 360
MESFLLRHGHRTHNHAQHRRTVDMLAASVRGANADDGLFPPANTYKSPHAPDDVDKVFDH
Sbjct: 301 MESFLLRHGHRTHNHAQHRRTVDMLAASVRGANADDGLFPPANTYKSPHAPDDVDKVFDH 360
Query: 361 FRRNNTDTSSSVASPATXXXXXXXXXXXXGGXXXXXXXXXXXXXXXSNAACSNSNDHXXX 420
FRRNNTDTSSSVASPAT GG SNAACSNSNDH
Sbjct: 361 FRRNNTDTSSSVASPATDLFLEKLEDDDDGGWPWERETPRPPPHHTSNAACSNSNDHGGR 420
Query: 421 XXXXXXXXXXXXXXXXXNFNTALIRRLWQSAISESRRKTAASASGRNRVLHNGFSPSRSS 480
NFNTALIRRLWQSAISESRRKTAASASGRNRVLHNGFSPSRSS
Sbjct: 421 SGVTEEEGGSGRSRRSGNFNTALIRRLWQSAISESRRKTAASASGRNRVLHNGFSPSRSS 480
Query: 481 TVVDQAGSAAXXXXXXXXXXXXXXXXXXXXXXXXXARMDDHHTADKPCQPQIINYAS 537
TVVDQAGSAA ARMDDHHTADKPCQPQIINYAS
Sbjct: 481 TVVDQAGSAAMEKENEINSKNKKKKKKSLMEKLMEARMDDHHTADKPCQPQIINYAS 537
>Os04g0625000 Conserved hypothetical protein
Length = 175
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 72/111 (64%), Gaps = 7/111 (6%)
Query: 202 NGKLVKEVARAR-------QRVETERKARELMEEACEELSKEVEEDQAEVEALRRECVSX 254
N KLV E+ A+ Q + ERKAREL EE C EL++EVEED+AE+EAL+ + +
Sbjct: 44 NLKLVNELKEAKMSAKQLLQEYDNERKARELTEEVCNELAREVEEDKAEIEALKHDSLKL 103
Query: 255 XXXXXXXXXXLQMAEVWREERVQMKLSDAKAVLEHKYAHLNTLQSEMESFL 305
LQMAEVWREERVQMKL DAK L+ KY L+ LQ ++E+F+
Sbjct: 104 REEVDEERKMLQMAEVWREERVQMKLVDAKLTLDAKYTQLSKLQQDVEAFI 154
>Os08g0190700 Conserved hypothetical protein
Length = 675
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 86/168 (51%), Gaps = 12/168 (7%)
Query: 202 NGKLVKEVARAR-------QRVETERKARELMEEACEELSKEVEEDQAEVEALRRECVSX 254
N KLV E+ + Q + ERK REL EE C +L +E+EE +AE+E L+++ +
Sbjct: 279 NIKLVDELKEVKMAANNLLQEYDNERKTRELTEEVCTKLVRELEEHKAEIEGLKQDSLKL 338
Query: 255 XXXXXXXXXXLQMAEVWREERVQMKLSDAKAVLEHKYAHLNTLQSEMESFLLRHGHRTHN 314
LQMAEVWREERVQMKL DAK LE KY L+ LQ ++E+ + T
Sbjct: 339 RAEVDEDRKLLQMAEVWREERVQMKLVDAKLTLEAKYEELSKLQLDVEAIIASFSD-TKG 397
Query: 315 HAQHRRTVDMLAASVRGANADDGLFPPANTYKSPHAPDDVDKVFDHFR 362
+T + S+ + F TY+ P A DD+ + + R
Sbjct: 398 DDTIVQTAKNILQSIESTREQEIKF----TYEPPPASDDILAIIEELR 441
>Os04g0382850 Conserved hypothetical protein
Length = 314
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 212 ARQRVETERKARELMEEACEELSKEVEEDQAEVEALRRECVSXXXXXXXXXXXLQMAEVW 271
A + +E ERK++ +E+ C EL + + ED+AEVEAL++E LQ+A+ W
Sbjct: 54 ATKELERERKSKGRVEKICTELIRGIGEDKAEVEALKKETEKAQEELQKEREMLQLADEW 113
Query: 272 REERVQMKLSDAKAVLEHKYAHLNTLQSEMESFLLRHGHRTHNHAQHRRTVDMLAASVRG 331
RE+RVQMKL +A+ E K A +N L E++++L H Q + +L AS G
Sbjct: 114 REQRVQMKLLEARLQFEEKNAAINQLHDELQAYL----DTKKEHGQSNDQMTLLRASENG 169
Query: 332 ANADDGL 338
D +
Sbjct: 170 REIADNI 176
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.125 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,391,784
Number of extensions: 392587
Number of successful extensions: 1339
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1335
Number of HSP's successfully gapped: 4
Length of query: 537
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 431
Effective length of database: 11,501,117
Effective search space: 4956981427
Effective search space used: 4956981427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)