BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0625000 Os04g0625000|AY224500
(175 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G20350.1 | chr3:7096602-7099372 FORWARD LENGTH=674 221 2e-58
AT1G50660.1 | chr1:18771386-18774385 FORWARD LENGTH=726 214 1e-56
AT3G11590.1 | chr3:3660628-3663537 FORWARD LENGTH=623 120 3e-28
AT5G22310.1 | chr5:7383742-7385345 REVERSE LENGTH=482 76 1e-14
AT1G11690.1 | chr1:3941469-3942212 FORWARD LENGTH=248 67 7e-12
AT5G41620.1 | chr5:16646330-16648776 FORWARD LENGTH=624 64 6e-11
AT1G64180.1 | chr1:23821640-23824193 FORWARD LENGTH=594 55 2e-08
AT2G46250.1 | chr2:18991386-18993201 FORWARD LENGTH=469 50 5e-07
AT1G64690.1 | chr1:24038069-24038890 FORWARD LENGTH=274 50 6e-07
>AT3G20350.1 | chr3:7096602-7099372 FORWARD LENGTH=674
Length = 673
Score = 221 bits (562), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/156 (67%), Positives = 140/156 (89%)
Query: 1 FKKLAEEKAAWRSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQ 60
KK++EE+AAWRSREHEKVRAI++DMKAD++ EKK R+RLE++N KLVNEL ++K++ K+
Sbjct: 248 LKKVSEERAAWRSREHEKVRAIIDDMKADMNQEKKTRQRLEIVNSKLVNELADSKLAVKR 307
Query: 61 LLQEYDNERKARELTEEVCNELAREVEEDKAEIEALKHDSLKLREEVDEERKMLQMAEVW 120
+ +Y ERKAREL EEVC+ELA+E+EEDKAEIEALK +S+ LREEVD+ER+MLQMAEVW
Sbjct: 308 YMHDYQQERKARELIEEVCDELAKEIEEDKAEIEALKSESMNLREEVDDERRMLQMAEVW 367
Query: 121 REERVQMKLVDAKLTLDAKYTQLSKLQQDVEAFIAA 156
REERVQMKL+DAK+TL+ KY+Q++KL D+EAF+++
Sbjct: 368 REERVQMKLIDAKVTLEEKYSQMNKLVGDMEAFLSS 403
>AT1G50660.1 | chr1:18771386-18774385 FORWARD LENGTH=726
Length = 725
Score = 214 bits (546), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/154 (65%), Positives = 137/154 (88%)
Query: 1 FKKLAEEKAAWRSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQ 60
+K++EE+AAWRSREHEKVRAI++DMK D++ EKK R+RLE++N KLVNEL ++K++ K+
Sbjct: 271 LRKVSEERAAWRSREHEKVRAIIDDMKTDMNREKKTRQRLEIVNHKLVNELADSKLAVKR 330
Query: 61 LLQEYDNERKARELTEEVCNELAREVEEDKAEIEALKHDSLKLREEVDEERKMLQMAEVW 120
+Q+Y+ ERKAREL EEVC+ELA+E+ EDKAEIEALK +S+ LREEVD+ER+MLQMAEVW
Sbjct: 331 YMQDYEKERKARELIEEVCDELAKEIGEDKAEIEALKRESMSLREEVDDERRMLQMAEVW 390
Query: 121 REERVQMKLVDAKLTLDAKYTQLSKLQQDVEAFI 154
REERVQMKL+DAK+ L+ +Y+Q++KL D+E+F+
Sbjct: 391 REERVQMKLIDAKVALEERYSQMNKLVGDLESFL 424
>AT3G11590.1 | chr3:3660628-3663537 FORWARD LENGTH=623
Length = 622
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 112/159 (70%)
Query: 1 FKKLAEEKAAWRSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQ 60
K+ AEEKA W+S E E V A +E + +L+ E+K RRR E +N KL EL E K + +
Sbjct: 289 MKRFAEEKAVWKSNEQEVVEAAIESVAGELEVERKLRRRFESLNKKLGKELAETKSALMK 348
Query: 61 LLQEYDNERKARELTEEVCNELAREVEEDKAEIEALKHDSLKLREEVDEERKMLQMAEVW 120
++E +NE++AR + E+VC+ELAR++ EDKAE+E LK +S K++EEV++ER+MLQ+A+
Sbjct: 349 AVKEIENEKRARVMVEKVCDELARDISEDKAEVEELKRESFKVKEEVEKEREMLQLADAL 408
Query: 121 REERVQMKLVDAKLTLDAKYTQLSKLQQDVEAFIAACSC 159
REERVQMKL +AK L+ K + KL+ ++ ++ A C
Sbjct: 409 REERVQMKLSEAKHQLEEKNAAVDKLRNQLQTYLKAKRC 447
>AT5G22310.1 | chr5:7383742-7385345 REVERSE LENGTH=482
Length = 481
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 76/118 (64%), Gaps = 14/118 (11%)
Query: 33 EKKNRRRLEMINLKLVNELKEAKMSAKQLLQEYDNERKARELTEEVCNELAREVEEDKAE 92
E+K RRR E +N +L EL EAK + +++ +E E++A+++ EEVC+EL + + +DK E
Sbjct: 256 ERKLRRRTEKMNRRLGRELTEAKETERKMKEEMKREKRAKDVLEEVCDELTKGIGDDKKE 315
Query: 93 IEALKHDSLKLREEVDEERKMLQMAEVWREERVQMKLVDAKLTLDAKYTQLSKLQQDV 150
+E +ER+M+ +A+V REERVQMKL +AK + KY + +L++++
Sbjct: 316 ME--------------KEREMMHIADVLREERVQMKLTEAKFEFEDKYAAVERLKKEL 359
>AT1G11690.1 | chr1:3941469-3942212 FORWARD LENGTH=248
Length = 247
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 80/133 (60%), Gaps = 14/133 (10%)
Query: 12 RSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQLLQEYDNERKA 71
R+ + E ++ +K L E++ ++R++ N +L ++ + + S +L R+
Sbjct: 71 RNEKEETTNPFVDYLKEKLSKEREEKKRVKAENSRLKKKILDMESSVNRL-------RRE 123
Query: 72 RELTEEVCNELAREVEEDKAEIEALKHDSLKLREEVDEERKMLQMAEVWREERVQMKLVD 131
R+ E+VC EL ++E LK ++ ++ +E +EER+MLQMAE+WREERV++K +D
Sbjct: 124 RDTMEKVCEELVTRIDE-------LKVNTRRVWDETEEERQMLQMAEMWREERVRVKFMD 176
Query: 132 AKLTLDAKYTQLS 144
AKL L KY +++
Sbjct: 177 AKLALQEKYEEMN 189
>AT5G41620.1 | chr5:16646330-16648776 FORWARD LENGTH=624
Length = 623
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 93/158 (58%), Gaps = 8/158 (5%)
Query: 2 KKLAEEKAAWRSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQL 61
K+LAEEK +++E E++ + ++ ++ L+ E+K R+R E ++ K+ EL E K S
Sbjct: 253 KQLAEEKLLSKNKEVERMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNC 312
Query: 62 LQEYDNERKARELTEEVCNELAREVEEDKAEIEALKHDSL----KLREEVDEERKMLQMA 117
++E + K+ ++ E +C+E A+ ++ + EI LK +L R D+ +L +A
Sbjct: 313 VKELERGSKSNKMMELLCDEFAKGIKSYEEEIHGLKKKNLDKDWAGRGGGDQ--LVLHIA 370
Query: 118 EVWREERVQMKLVDAKLTLDAKY-TQLSKLQQDVEAFI 154
E W +ER+QM+L + TL+ K + L KL+ ++E F+
Sbjct: 371 ESWLDERMQMRL-EGGDTLNGKNRSVLDKLEVEIETFL 407
>AT1G64180.1 | chr1:23821640-23824193 FORWARD LENGTH=594
Length = 593
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 2 KKLAEEKAAWRSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQL 61
K+LAEEK + ++EH+++ + ++ L+ E+K R+R E + KL EL E K +
Sbjct: 245 KQLAEEKLSKGTKEHDRLSSAVQS----LEDERKLRKRSESLYRKLAQELSEVKSTLSNC 300
Query: 62 LQEYDNERKARELTEEVCNELAREVEEDKAEIEALKHDSLKLREEVDEERKM-LQMAEVW 120
++E + +++++ E +C+E A+ ++ + EI LK K + DE+ M L +AE W
Sbjct: 301 VKEMERGTESKKILERLCDEFAKGIKSYEREIHGLKQKLDKNWKGWDEQDHMILCIAESW 360
Query: 121 REERVQMKLVDAKLTLDAKYTQLSKLQQDVEAFI 154
+ER+Q + L KL+ ++E F+
Sbjct: 361 LDERIQ----------SGNGSALEKLEFEIETFL 384
>AT2G46250.1 | chr2:18991386-18993201 FORWARD LENGTH=469
Length = 468
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 22 ILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQLLQEYDNERKARELTEEVCNE 81
+ +K +LD E+K R+ E ++ KL EL EAK + L++ + E + R + E +C+E
Sbjct: 226 VFRSIKRELDDERKVRKESETLHRKLTRELCEAKHCLSKALKDLEKETQERVVVENLCDE 285
Query: 82 LAREVEEDKAEIEALKHDSLKLREEVDEERKMLQMAEVWREERVQMKL 129
A+ V++ + ++ + S + ++V ++Q+AEVW ++R+QMKL
Sbjct: 286 FAKAVKDYEDKVRRIGKKS-PVSDKV-----IVQIAEVWSDQRLQMKL 327
>AT1G64690.1 | chr1:24038069-24038890 FORWARD LENGTH=274
Length = 273
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 70/111 (63%), Gaps = 21/111 (18%)
Query: 23 LEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQLLQEYDNERKARELTEEVCNEL 82
++++KA+LD+E+K RRR E++ KL +++E +M+ + + N+R +EL+ E
Sbjct: 84 IKELKAELDYERKARRRAELMIKKLAKDVEEERMAREAEEMQ--NKRLFKELSSE----- 136
Query: 83 AREVEEDKAEIEALKHDSLKLREEVDEERKMLQMAEVWREERVQMKLVDAK 133
K + ++++ +++EER+M ++AEV REERVQMKL+DA+
Sbjct: 137 --------------KSEMVRMKRDLEEERQMHRLAEVLREERVQMKLMDAR 173
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.127 0.335
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,317,094
Number of extensions: 129283
Number of successful extensions: 1516
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1551
Number of HSP's successfully gapped: 10
Length of query: 175
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 83
Effective length of database: 8,584,297
Effective search space: 712496651
Effective search space used: 712496651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 108 (46.2 bits)