BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0154000 Os08g0154000|AK063541
(302 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0154000 O-methyltransferase, family 3 protein 450 e-127
Os08g0498100 Similar to Caffeoyl-CoA O-methyltransferase 2 ... 141 6e-34
Os06g0165800 Similar to Caffeoyl-CoA 3-O-methyltransferase ... 138 4e-33
Os08g0498600 Similar to Caffeoyl-CoA 3-O-methyltransferase ... 134 1e-31
Os09g0481400 Similar to Caffeoyl-CoA O-methyltransferase (E... 126 2e-29
Os08g0498400 Similar to Caffeoyl-CoA 3-O-methyltransferase ... 121 6e-28
>Os08g0154000 O-methyltransferase, family 3 protein
Length = 302
Score = 450 bits (1158), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/268 (83%), Positives = 225/268 (83%)
Query: 35 TTRVPRALALTASTCPWHRRHLCXXXXXXXXXXXXXXXXXXVEEARQGRKQLGATTQLYE 94
TTRVPRALALTASTCPWHRRHLC VEEARQGRKQLGATTQLYE
Sbjct: 35 TTRVPRALALTASTCPWHRRHLCSSSSSSSSAAAAAATAAAVEEARQGRKQLGATTQLYE 94
Query: 95 YLLANVREHPVLKELREETAAMRGSQMQVSPXXXXXXXXXXXXXXXXRCIEVGVYTGYSS 154
YLLANVREHPVLKELREETAAMRGSQMQVSP RCIEVGVYTGYSS
Sbjct: 95 YLLANVREHPVLKELREETAAMRGSQMQVSPAQAQLLAMLAQILGAQRCIEVGVYTGYSS 154
Query: 155 LAVALALPESGRLVACERDERCLEVAKKYYQRSGVAHKVDVKHALAADSLKLLIDGGEVN 214
LAVALALPESGRLVACERDERCLEVAKKYYQRSGVAHKVDVKHALAADSLKLLIDGGEVN
Sbjct: 155 LAVALALPESGRLVACERDERCLEVAKKYYQRSGVAHKVDVKHALAADSLKLLIDGGEVN 214
Query: 215 SYDFAFVDADKRMXXXXXXXXXKLVRVGGLIVIDNVLWYGRVADPLVNDRKTISIRNFNK 274
SYDFAFVDADKRM KLVRVGGLIVIDNVLWYGRVADPLVNDRKTISIRNFNK
Sbjct: 215 SYDFAFVDADKRMYEEYYELLLKLVRVGGLIVIDNVLWYGRVADPLVNDRKTISIRNFNK 274
Query: 275 KLLEDNRVSISMVPIGDGMTICRKLVDT 302
KLLEDNRVSISMVPIGDGMTICRKLVDT
Sbjct: 275 KLLEDNRVSISMVPIGDGMTICRKLVDT 302
>Os08g0498100 Similar to Caffeoyl-CoA O-methyltransferase 2 (EC 2.1.1.104)
(Trans-caffeoyl-CoA 3-O-methyltransferase 2) (CCoAMT-2)
(CCoAOMT-2)
Length = 252
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 123/230 (53%), Gaps = 13/230 (5%)
Query: 84 KQLGATTQLYEYLLANV---REHPVLKELREETAAMRGSQMQVSPXXXXXXXXXXXXXXX 140
K L + LY+Y+L RE +++LR T + MQ S
Sbjct: 23 KTLLKSDALYKYVLDTTVLPREPECMRDLRLITDKHQWGFMQSSADEAQLLGMLLKMAGA 82
Query: 141 XRCIEVGVYTGYSSLAVALALPESGRLVACERDERCLEVAKKYYQRSGVAHKVDVKHALA 200
R IEVGV+TGYS LA ALALPE G++VA + D E+ + + +++GVAHKVD +
Sbjct: 83 KRTIEVGVFTGYSLLATALALPEDGKVVAIDPDRESYEIGRPFLEKAGVAHKVDFREGKG 142
Query: 201 ADSLKLLI----DGGEVNSYDFAFVDADKRMXXXXXXXXXKLVRVGGLIVIDNVLWYGRV 256
+ L L+ G ++DFAFVDADK +LVRVGG IV DN LW G V
Sbjct: 143 LEKLDELLAEEAAAGREAAFDFAFVDADKPNYVKYHEQLLQLVRVGGHIVYDNTLWAGTV 202
Query: 257 ADPL------VNDRKTISIRNFNKKLLEDNRVSISMVPIGDGMTICRKLV 300
A P ++ R +++IR+ N +L D R+ + + I DG+TICR+LV
Sbjct: 203 ALPPDTPLSDLDRRFSVAIRDLNSRLAADPRIDVCQLAIADGITICRRLV 252
>Os06g0165800 Similar to Caffeoyl-CoA 3-O-methyltransferase (Fragment)
Length = 260
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 121/228 (53%), Gaps = 10/228 (4%)
Query: 82 GRKQLGATTQLYEYLLANV---REHPVLKELREETAAMRGSQMQVSPXXXXXXXXXXXXX 138
G K L + LY+Y+L REH +KELRE TA + M S
Sbjct: 32 GHKSLLKSDDLYQYILETSVYPREHECMKELREVTANHPWNLMTTSADEGQFLNLLLKLI 91
Query: 139 XXXRCIEVGVYTGYSSLAVALALPESGRLVACERDERCLEVAKKYYQRSGVAHKVDVKHA 198
+ +E+GVYTGYS LA ALA+P+ G ++A + + E+ +++GVAHK+D +
Sbjct: 92 GAKKTMEIGVYTGYSLLATALAIPDDGTILAMDINRENYELGLPSIEKAGVAHKIDFREG 151
Query: 199 LAADSLKLLI-DGGEVNSYDFAFVDADKRMXXXXXXXXXKLVRVGGLIVIDNVLWYGRVA 257
A L L+ + G S+DF FVDADK KLV+VGGL+ DN LW G V
Sbjct: 152 PALPVLDQLVEEEGNHGSFDFVFVDADKDNYLNYHERLMKLVKVGGLVGYDNTLWNGSVV 211
Query: 258 DPL-VNDRKTI-SIRNF----NKKLLEDNRVSISMVPIGDGMTICRKL 299
P RK I R+F NK L D+RV I +P+GDG+T+CR++
Sbjct: 212 LPADAPMRKYIRYYRDFVLELNKALAADHRVEICQLPVGDGITLCRRV 259
>Os08g0498600 Similar to Caffeoyl-CoA 3-O-methyltransferase (Fragment)
Length = 234
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 114/230 (49%), Gaps = 11/230 (4%)
Query: 80 RQGRKQLGATTQLYEYLLANV---REHPVLKELREETAAMRGSQMQVSPXXXXXXXXXXX 136
R G L + + EY+L REH L+ELR T S M SP
Sbjct: 5 RPGSNTLLKSDSILEYVLDTTVYPREHERLRELRLITQNHPKSFMGSSPDQMQFFSVLLK 64
Query: 137 XXXXXRCIEVGVYTGYSSLAVALALPESGRLVACERDERCLEVAKKYYQRSGVAHKVDVK 196
+EVGV+TGYS LA ALALP+ G++VA + E+ + + +GVAHKVD +
Sbjct: 65 MIGARNAVEVGVFTGYSLLATALALPDDGKVVAIDVSREYYELGRPVIEDAGVAHKVDFR 124
Query: 197 HALAADSLKLLIDGGEVNSYDFAFVDADKRMXXXXXXXXXKLVRVGGLIVIDNVLWYGRV 256
H L L+ GGE +DFA+ DADK +L+RVGG++ DN LW G V
Sbjct: 125 HGDGLAVLDQLLAGGE-GKFDFAYADADKEQYRGYHERLVRLLRVGGVVAYDNTLWGGSV 183
Query: 257 ADPLVNDRKTISIR-------NFNKKLLEDNRVSISMVPIGDGMTICRKL 299
A P + R FN + D+RV ++P+ DG+T+CR+L
Sbjct: 184 AMPRDTPGSSAYDRVVRDYMVGFNAMVAADDRVEACLLPVADGVTLCRRL 233
>Os09g0481400 Similar to Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)
(Trans-caffeoyl-CoA 3- O-methyltransferase) (CCoAMT)
(CCoAOMT)
Length = 258
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 116/231 (50%), Gaps = 15/231 (6%)
Query: 84 KQLGATTQLYEYLLANV---REHPVLKELREETAAMRGSQMQVSPXXXXXXXXXXXXXXX 140
K L + LY+Y+L + RE L+ELR TA + M SP
Sbjct: 27 KTLLKSEPLYQYVLESTVFPREPDCLRELRLATANHPMAVMAASPDQVQLFGLLIELISA 86
Query: 141 XRCIEVGVYTGYSSLAVALALPESGRLVACERD-ERCLEVAKKYYQRSGVAHKVDVKHAL 199
IEVGV+TGYS LA ALALP+ G++VA + E EV ++GVAHKVD + L
Sbjct: 87 KNAIEVGVFTGYSLLATALALPDDGKIVAIDVSRESYDEVGAPVIDKAGVAHKVDFRVGL 146
Query: 200 AADSL-KLLIDGGEVNSYDFAFVDADKRMXXXXXXXXXKLVRVGGLIVIDNVLWYGRV-- 256
A L +L+ + G +DFAFVDADK +LVRVGGLI DN LW G V
Sbjct: 147 AMPVLDELVAEEGNKGRFDFAFVDADKVNFLGYHERLLQLVRVGGLIAYDNTLWGGSVAA 206
Query: 257 -------ADPLVNDRKTISI-RNFNKKLLEDNRVSISMVPIGDGMTICRKL 299
A P DR ++ R FN + D RV + I DG+ +CR++
Sbjct: 207 PPAAADEAVPSGRDRSLAALAREFNAAIAADRRVKPCQLAIADGVMLCRRV 257
>Os08g0498400 Similar to Caffeoyl-CoA 3-O-methyltransferase (Fragment)
Length = 292
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 113/227 (49%), Gaps = 10/227 (4%)
Query: 84 KQLGATTQLYEYLLANV---REHPVLKELREETAAMRGSQMQVSPXXXXXXXXXXXXXXX 140
K L + L+EY+L + RE+ ++ELR T+ M P
Sbjct: 66 KTLLKSESLHEYMLNTMVYPRENEFMRELRLITSEHTYGFMSSPPEEGQLLSLLLNLTGA 125
Query: 141 XRCIEVGVYTGYSSLAVALALPESGRLVACERDERCLEVAKKYYQRSGVAHKVDVKHALA 200
IEVGV+TG S LA ALA+P+ G++VA + ++ +++GVAHKVD + A
Sbjct: 126 KNTIEVGVFTGCSVLATALAIPDDGKVVAIDVSREYFDLGLPVIKKAGVAHKVDFREGAA 185
Query: 201 ADSL-KLLIDGGEVNSYDFAFVDADKRMXXXXXXXXXKLVRVGGLIVIDNVLWYGRVA-- 257
L LL + +DFAFVDADK +LVR GG++ DN LW G VA
Sbjct: 186 MPILDNLLANEENEGKFDFAFVDADKGNYGEYHERLLRLVRAGGVLAYDNTLWGGSVALE 245
Query: 258 DPLVNDRKTISIRN----FNKKLLEDNRVSISMVPIGDGMTICRKLV 300
D V + IR FN K+ D RV +P+ DG+T+CR+LV
Sbjct: 246 DDSVLEEFDQDIRRSIVAFNAKIAGDPRVEAVQLPVSDGITLCRRLV 292
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,080,416
Number of extensions: 223281
Number of successful extensions: 389
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 6
Length of query: 302
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 202
Effective length of database: 11,814,401
Effective search space: 2386509002
Effective search space used: 2386509002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)