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Os09g0481400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104) (Trans-caffeoyl-CoA 3- O-methyltransferase) (CCoAMT) (CCoAOMT).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.69 (0.0303) R2 : 0.436
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.57 (0.111) R2dE : 0.264 R2E : 0.0132
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.03 (0.0656) R2dN8 : 0.423 R2N8 : 0.172
σ : 0.565
deviance : 147.2
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 13.66
memory length : 1228
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.13 0.53 8.72 -0.297 0.682 -1.02 0.711 1.83 -1.1 23.7 30 1358 -- --
133.48 0.538 8.73 -0.132 0.68 -1.03 0.49 -- -1.08 23.5 40 1357 -- --
129.19 0.529 8.72 -0.301 0.685 -1.03 -- 1.68 -1.11 23.5 30 1361 -- --
133.76 0.539 8.71 -0.119 0.59 -1.05 -- -- -1.07 23.7 40.47 1312 -- --
142.74 0.556 8.71 -0.247 -- -1.55 -- 1.85 -1.13 -- 19.77 1232 -- --
164.24 0.601 8.65 0.082 0.85 -- 0.622 -- -0.785 23.7 -- -- -- --
165.9 0.603 8.65 0.0576 0.848 -- -- -- -0.787 23.6 -- -- -- --
147.16 0.565 8.69 -0.0762 -- -1.54 -- -- -1.04 -- 15.69 1228 -- --
134.08 0.539 8.71 -- 0.609 -1.04 -- -- -1.07 23.6 40 1312 -- --
211.09 0.679 8.63 0.0813 -- -- -- -- -0.777 -- -- -- -- --
165.99 0.603 8.65 -- 0.849 -- -- -- -0.793 23.6 -- -- -- --
147.2 0.565 8.69 -- -- -1.57 -- -- -1.03 -- 13.66 1228 -- --
211.26 0.678 8.63 -- -- -- -- -- -0.786 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.21 radiation 40.0 270 < th dose independent rect. 8 7
2 122.84 wind 5.0 270 < th dose independent rect. 2 6
3 123.36 radiation 30.0 1440 < th dose dependent rect. 10 3
4 123.62 wind 5.0 270 < th dose independent rect. 3 4
7 123.93 wind 7.0 270 < th dose independent rect. 3 16
9 124.23 wind 7.0 270 < th dose independent rect. 15 16
13 124.84 radiation 20.0 1440 < th dose independent rect. 8 6
15 125.02 radiation 20.0 1440 < th dose independent rect. 23 15
24 125.10 radiation 20.0 1440 < th dose independent rect. 17 21
30 125.17 temperature 15.0 270 > th dose independent rect. 15 16
31 125.27 radiation 40.0 270 < th dose independent rect. 9 17
32 125.30 precipitation 0.1 270 < th dose independent rect. 3 4
33 125.30 precipitation 0.1 270 < th dose dependent rect. 3 4
34 125.31 temperature 10.0 270 > th dose dependent rect. 13 9
37 125.36 radiation 30.0 1440 < th dose dependent rect. 8 6
40 125.43 wind 9.0 270 < th dose dependent rect. 3 4
41 125.44 precipitation 0.1 270 < th dose independent rect. 2 6
42 125.44 precipitation 0.1 270 < th dose dependent rect. 2 6
44 125.53 atmosphere 995.0 270 > th dose independent rect. 7 20
46 125.56 atmosphere 995.0 270 > th dose independent rect. 8 18
48 125.64 radiation 20.0 1440 < th dose independent rect. 10 3
71 125.83 temperature 10.0 270 > th dose independent rect. 3 4
73 125.83 temperature 30.0 270 < th dose independent rect. 3 4
74 125.83 humidity 50.0 270 > th dose independent rect. 3 4
76 125.83 atmosphere 995.0 270 > th dose independent rect. 3 4
77 125.83 atmosphere 1015.0 270 < th dose independent rect. 3 4
78 125.83 radiation 40.0 270 < th dose independent rect. 3 4
81 125.83 temperature 10.0 270 > th dose independent rect. 7 20
85 125.93 wind 9.0 270 < th dose dependent rect. 2 6
90 126.02 temperature 10.0 270 > th dose independent rect. 2 6
92 126.02 temperature 30.0 270 < th dose independent rect. 2 6
93 126.02 humidity 50.0 270 > th dose independent rect. 2 6
95 126.02 atmosphere 995.0 270 > th dose independent rect. 2 6
96 126.02 atmosphere 1015.0 270 < th dose independent rect. 2 6
98 126.02 temperature 10.0 270 > th dose independent rect. 8 18
101 126.04 temperature 10.0 270 > th dose dependent rect. 3 4
103 126.06 wind 7.0 270 < th dose independent rect. 12 9
108 126.14 radiation 40.0 270 < th dose independent rect. 2 6
114 126.30 radiation 20.0 1440 < th dose dependent rect. 6 9
115 126.30 radiation 20.0 1440 < th dose dependent rect. 23 16
122 126.35 temperature 30.0 270 < th dose independent rect. 8 19
139 126.55 radiation 20.0 1440 < th dose independent sin 2 NA
144 126.56 radiation 20.0 1440 > th dose independent rect. 11 2
164 126.64 radiation 1.0 1440 > th dose dependent rect. 11 2
169 126.67 humidity 50.0 270 > th dose dependent rect. 19 8
203 126.85 radiation 40.0 270 < th dose dependent rect. 3 4
223 126.95 humidity 70.0 270 > th dose independent rect. 19 8
246 127.06 radiation 20.0 1440 < th dose dependent sin 1 NA
268 127.35 radiation 20.0 1440 < th dose independent rect. 10 23
273 127.38 precipitation 0.1 270 < th dose independent rect. 8 18
274 127.38 precipitation 0.1 270 < th dose dependent rect. 8 18
276 127.43 radiation 20.0 1440 < th dose independent rect. 7 22
313 127.52 precipitation 0.1 270 < th dose independent rect. 7 20
317 127.52 precipitation 0.1 270 < th dose dependent rect. 7 20
340 127.56 radiation 20.0 1440 < th dose independent no NA NA
347 127.56 radiation 20.0 1440 < th dose independent rect. 3 23
419 127.67 atmosphere 995.0 270 > th dose independent rect. 7 8
428 127.71 radiation 40.0 270 < th dose dependent rect. 8 19
457 127.93 radiation 20.0 1440 < th dose dependent rect. 8 23
480 128.08 radiation 40.0 270 < th dose independent rect. 21 16
484 128.08 radiation 40.0 270 < th dose dependent rect. 9 17
521 128.16 temperature 10.0 270 > th dose independent rect. 7 8
522 128.16 atmosphere 1015.0 270 < th dose independent rect. 7 8
526 128.17 radiation 40.0 270 < th dose independent rect. 15 16
529 128.18 precipitation 0.1 270 < th dose independent rect. 15 16
531 128.18 precipitation 0.1 270 < th dose dependent rect. 15 16
534 128.20 precipitation 0.1 270 < th dose independent rect. 7 8
535 128.20 temperature 10.0 270 > th dose dependent rect. 2 6
537 128.20 precipitation 0.1 270 < th dose dependent rect. 7 8
543 128.27 temperature 30.0 270 < th dose independent rect. 8 7
554 128.32 wind 9.0 270 < th dose independent rect. 7 20
567 128.41 wind 9.0 270 < th dose independent rect. 8 18
588 128.47 precipitation 0.1 270 < th dose independent rect. 3 16
590 128.47 radiation 20.0 1440 < th dose dependent no NA NA
592 128.47 precipitation 0.1 270 < th dose dependent rect. 3 16
594 128.47 radiation 20.0 1440 < th dose dependent rect. 6 23
600 128.48 radiation 20.0 1440 < th dose dependent rect. 3 23
695 128.74 temperature 15.0 270 > th dose independent rect. 3 16
698 128.75 temperature 10.0 270 > th dose independent rect. 19 8
699 128.75 temperature 30.0 270 < th dose independent rect. 19 8
701 128.75 atmosphere 995.0 270 > th dose independent rect. 19 8
702 128.75 radiation 1.0 270 < th dose independent rect. 19 8
709 128.75 atmosphere 1015.0 270 < th dose independent rect. 3 16
712 128.75 radiation 1.0 270 < th dose dependent rect. 19 8
785 128.92 wind 9.0 270 < th dose independent rect. 19 8
805 128.97 temperature 15.0 270 > th dose independent rect. 13 8
810 128.98 humidity 50.0 270 > th dose independent rect. 8 18
813 128.98 humidity 50.0 270 > th dose dependent rect. 8 19
962 129.32 radiation 1.0 1440 > th dose dependent rect. 8 7