BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0481400 Os09g0481400|AK108479
(258 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G34050.1 | chr4:16310844-16311973 FORWARD LENGTH=260 276 7e-75
AT4G26220.1 | chr4:13284179-13285146 FORWARD LENGTH=233 273 7e-74
AT1G67980.1 | chr1:25487724-25488934 FORWARD LENGTH=233 216 1e-56
AT1G67990.1 | chr1:25489494-25490749 FORWARD LENGTH=234 201 2e-52
AT1G24735.2 | chr1:8757977-8759448 FORWARD LENGTH=292 173 7e-44
AT3G61990.1 | chr3:22957318-22958910 REVERSE LENGTH=291 158 2e-39
AT3G62000.2 | chr3:22959223-22961180 REVERSE LENGTH=353 150 5e-37
>AT4G34050.1 | chr4:16310844-16311973 FORWARD LENGTH=260
Length = 259
Score = 276 bits (706), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 129/236 (54%), Positives = 177/236 (75%), Gaps = 13/236 (5%)
Query: 27 KTLLKSEPLYQYVLESTVFPREPDCLRELRLATANHPMAVMAASPDQVQLFGLLIELISA 86
K+LL+S+ LYQY+LE++V+PREP+ ++ELR TA HP +M S D+ Q +LI+L++A
Sbjct: 33 KSLLQSDDLYQYILETSVYPREPESMKELREVTAKHPWNIMTTSADEGQFLNMLIKLVNA 92
Query: 87 KNAIEVGVFTGYSLLATALALPDDGKIVAIDVSRESYDEVGAPVIDKAGVAHKVDFRVGL 146
KN +E+GV+TGYSLLATALALP+DGKI+A+DV+RE+Y E+G P+I+KAGVAHK+DFR G
Sbjct: 93 KNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENY-ELGLPIIEKAGVAHKIDFREGP 151
Query: 147 AMPVLDELVAEEGNKGRFDFAFVDADKVNFLGYHERLLQLVRVGGLIAYDNTLWGGSVXX 206
A+PVLDE+VA+E N G +DF FVDADK N++ YH+RL+ LV++GG+I YDNTLW GSV
Sbjct: 152 ALPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVV- 210
Query: 207 XXXXXDEAVPSGRDRSLAALAREF----NAAIAADRRVKPCQLAIADGVMLCRRVA 258
A P R R+F N A+AAD R++ C L + DG+ +CRR++
Sbjct: 211 -------APPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS 259
>AT4G26220.1 | chr4:13284179-13285146 FORWARD LENGTH=233
Length = 232
Score = 273 bits (698), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 131/233 (56%), Positives = 173/233 (74%), Gaps = 6/233 (2%)
Query: 25 HSKTLLKSEPLYQYVLESTVFPREPDCLRELRLATANHPMAVMAASPDQVQLFGLLIELI 84
+K LLKSE LY+Y+LE++V+PREP+ LRELR T NHP A MA +PD QL G+L+ L+
Sbjct: 5 EAKGLLKSEELYKYILETSVYPREPEVLRELRNITHNHPQAGMATAPDAGQLMGMLLNLV 64
Query: 85 SAKNAIEVGVFTGYSLLATALALPDDGKIVAIDVSRESYDEVGAPVIDKAGVAHKVDFRV 144
+A+ IEVGVFTGYSLL TAL LP+DGK++AID++R+SY E+G PVI KAGV HK+DF+
Sbjct: 65 NARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSY-EIGLPVIKKAGVEHKIDFKE 123
Query: 145 GLAMPVLDELVAEEGNKGRFDFAFVDADKVNFLGYHERLLQLVRVGGLIAYDNTLWGGSV 204
A+P LDEL+ + N+G FDFAFVDADK+N+ YHERL++L++VGG+I YDNTLWGGSV
Sbjct: 124 SEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSV 183
Query: 205 XXXXXXXDEAVPSGRDRSLAALAREFNAAIAADRRVKPCQLAIADGVMLCRRV 257
D + P R A E N ++AD+RV+ Q A+ DG+ +CRR+
Sbjct: 184 ----AEPDSSTPEWRIEVKKA-TLELNKKLSADQRVQISQAALGDGITICRRL 231
>AT1G67980.1 | chr1:25487724-25488934 FORWARD LENGTH=233
Length = 232
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 158/234 (67%), Gaps = 11/234 (4%)
Query: 26 SKTLLKSEPLYQYVLESTVFPREPDCLRELRLATANH--PMAVMAASPDQVQLFGLLIEL 83
+K +LKSE L QY++E++ +PRE + L+ELR AT ++ M D+ +L+++
Sbjct: 7 TKGILKSEALKQYIMETSAYPREHELLKELRKATVQKYGNLSEMEVPVDEGHFLSMLVKI 66
Query: 84 ISAKNAIEVGVFTGYSLLATALALPDDGKIVAIDVSRESYDEVGAPVIDKAGVAHKVDFR 143
++AKN IE+GVFTGYSLL TALALP+DG+I AID+ +E+Y EVG I KAGV HK++F
Sbjct: 67 MNAKNTIEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY-EVGLEFIKKAGVDHKINFI 125
Query: 144 VGLAMPVLDELVAEEGNKGRFDFAFVDADKVNFLGYHERLLQLVRVGGLIAYDNTLWGGS 203
+ LD+LV +K FDFAF DADK +++ +HERLL+LV+VGG+IA+DNTLW G
Sbjct: 126 HSDGLKALDQLV---NDKCEFDFAFADADKSSYVNFHERLLKLVKVGGIIAFDNTLWFGF 182
Query: 204 VXXXXXXXDEAVPSGRDRSLAALAREFNAAIAADRRVKPCQLAIADGVMLCRRV 257
V ++ VP AAL EFN +A D RV+ Q++I DG+ LCRR+
Sbjct: 183 V----AEDEDGVPEHMREYRAALI-EFNKKLALDPRVEVSQISIGDGITLCRRL 231
>AT1G67990.1 | chr1:25489494-25490749 FORWARD LENGTH=234
Length = 233
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 155/236 (65%), Gaps = 10/236 (4%)
Query: 24 LHSKTLLKSEPLYQYVLESTVFPREPDCLRELRLATANH--PMAVMAASPDQVQLFGLLI 81
L K +LKSE L QY++E+T +PRE + L+ELR AT ++ M D+ +L+
Sbjct: 5 LPDKGILKSEALKQYIMETTAYPREHELLKELREATIQRYGNLSEMGVPVDESLFLSMLV 64
Query: 82 ELISAKNAIEVGVFTGYSLLATALALPDDGKIVAIDVSRESYDEVGAPVIDKAGVAHKVD 141
++I+AKN IE+GVFTGYSL ALALP+DG+I AID+ + Y+ +G + KAGV HK++
Sbjct: 65 KIINAKNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYN-LGLEFMKKAGVDHKIN 123
Query: 142 FRVGLAMPVLDELVAEEGNKGRFDFAFVDADKVNFLGYHERLLQLVRVGGLIAYDNTLWG 201
F A+ LD+L+ G K +DFAFVDADK N++ + E+LL+LV+VGG+IA+DNTLW
Sbjct: 124 FIQSDAVRGLDQLL--NGEKQEYDFAFVDADKTNYVYFLEKLLKLVKVGGIIAFDNTLWF 181
Query: 202 GSVXXXXXXXDEAVPSGRDRSLAALAREFNAAIAADRRVKPCQLAIADGVMLCRRV 257
G++ + VP G R+ EFN +A D RV+ Q++I DG+ LCRR+
Sbjct: 182 GTL----IQKENEVP-GHMRAYREALLEFNKILARDPRVEIAQISIGDGLTLCRRL 232
>AT1G24735.2 | chr1:8757977-8759448 FORWARD LENGTH=292
Length = 291
Score = 173 bits (439), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 105/282 (37%), Positives = 148/282 (52%), Gaps = 60/282 (21%)
Query: 29 LLKSEPLYQYVLESTVFPREPDCLRELRLAT----------------------------- 59
+LKS+ L +Y+ E+T +PRE + L++LR AT
Sbjct: 16 ILKSDALKKYIFETTAYPREHEQLKKLREATVLKYGNLYTVLLYDHTLILSNNNCKYHNV 75
Query: 60 -----------------ANHPMAV-------MAASPDQVQLFGLLIELISAKNAIEVGVF 95
+N M M D+ +L+++++AK IE+GVF
Sbjct: 76 TTLDPTKYVYHQFKDYTSNEKMVCACMRRSEMEVPVDEGHFLSMLLKIMNAKKTIELGVF 135
Query: 96 TGYSLLATALALPDDGKIVAIDVSRESYDEVGAPVIDKAGVAHKVDFRVGLAMPVLDELV 155
TGYSLL TALALP DG + ID+ +E+Y E+G I AGV HK++F + LD ++
Sbjct: 136 TGYSLLTTALALPHDGHVTGIDIDKEAY-EMGLEFIKNAGVHHKINFIHSDCLQALDNML 194
Query: 156 AEEGNKGRFDFAFVDADKVNFLGYHERLLQLVRVGGLIAYDNTLWGGSVXXXXXXXDEAV 215
+E K FDFAFVDADK N+ HERL++LV+VGG+IA+DNTLW G V +E V
Sbjct: 195 SENP-KPEFDFAFVDADKPNYANMHERLMKLVKVGGVIAFDNTLWSGFV----AEKEENV 249
Query: 216 PSGRDRSLAALAREFNAAIAADRRVKPCQLAIADGVMLCRRV 257
P + A + N +AAD V+ Q++I DGV LCRR+
Sbjct: 250 PVHMRVNRKAFL-DLNKRLAADPHVEVSQVSIGDGVTLCRRL 290
>AT3G61990.1 | chr3:22957318-22958910 REVERSE LENGTH=291
Length = 290
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 130/222 (58%), Gaps = 18/222 (8%)
Query: 35 LYQYVLESTVFPREPDCLRELRLATANHPMAVMAASPDQVQLFGLLIELISAKNAIEVGV 94
LY YVL + RE + L++LR TA ++ + SPDQ QL +L+E++ AK IEVGV
Sbjct: 86 LYDYVLNNV---REHEILKQLREETA---ISQIQVSPDQAQLLAMLVEILGAKRCIEVGV 139
Query: 95 FTGYSLLATALALPDDGKIVAIDVSRESYDEVGAPVIDKAGVAHKVDFRVGLAMPVLDEL 154
+TGYS LA AL LP+ G++VA D + EV + AGV+HKV + GLA L +
Sbjct: 140 YTGYSSLAVALVLPESGRLVACDKDANAL-EVAKRYYELAGVSHKVTVKHGLAAESLMSM 198
Query: 155 VAEEGNKGRFDFAFVDADKVNFLGYHERLLQLVRVGGLIAYDNTLWGGSVXXXXXXXDEA 214
+ + G + +DFAF+DADK + Y E LL+LVRVGG+I DN LW G V D
Sbjct: 199 I-QNGEESSYDFAFLDADKAMYQEYFESLLRLVRVGGVIVIDNVLWHGWV------ADST 251
Query: 215 VPSGRDRSLAALAREFNAAIAADRRVKPCQLAIADGVMLCRR 256
V R SL R FN + D+RV ++I DG+ +CR+
Sbjct: 252 VNDERTISL----RNFNKKLMDDQRVSISMVSIGDGMTICRK 289
>AT3G62000.2 | chr3:22959223-22961180 REVERSE LENGTH=353
Length = 352
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/206 (43%), Positives = 119/206 (57%), Gaps = 15/206 (7%)
Query: 35 LYQYVLESTVFPREPDCLRELRLATANHPMAVMAASPDQVQLFGLLIELISAKNAIEVGV 94
LY YVL + REP LR+LR T+ + M SPDQ QL +L+++++A+ IEVGV
Sbjct: 71 LYDYVLSNV---REPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQMLAAERCIEVGV 127
Query: 95 FTGYSLLATALALPDDGKIVAIDVSRESYDEVGAPVIDKAGVAHKVDFRVGLAMPVLDEL 154
+TGYS LA AL LP+ G +VA + S EV + AGV+HKV+ + GLA L +
Sbjct: 128 YTGYSSLAVALVLPESGCLVACERDSNSL-EVAKRYYELAGVSHKVNVKQGLAAESLKSM 186
Query: 155 VAEEGNKGRFDFAFVDADKVNFLGYHERLLQLVRVGGLIAYDNTLWGGSVXXXXXXXDEA 214
+ + G +DFAFVDADK + Y E LLQLVRVGG+I DN LW G V D
Sbjct: 187 I-QNGEGASYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRV------SDPM 239
Query: 215 VPSGRDRSLAALAREFNAAIAADRRV 240
V + S+ R FN + D+RV
Sbjct: 240 VNDAKTISI----RNFNKKLMDDKRV 261
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,522,340
Number of extensions: 169216
Number of successful extensions: 354
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 7
Length of query: 258
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 162
Effective length of database: 8,474,633
Effective search space: 1372890546
Effective search space used: 1372890546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)