Os06g0165800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Caffeoyl-CoA 3-O-methyltransferase (Fragment).
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Os06g0165800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Caffeoyl-CoA 3-O-methyltransferase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.37 | 0.4 | 9.61 | 0.463 | 0.658 | 1.69 | -0.706 | 2.01 | -1.12 | 10.1 | 20.3 | 227 | -- | -- |
| 73.52 | 0.399 | 9.59 | 0.472 | 0.686 | 0.906 | -0.591 | -- | -1.13 | 9.92 | 21.01 | 202 | -- | -- |
| 74.26 | 0.401 | 9.61 | 0.434 | 0.661 | 1.58 | -- | 1.89 | -1.12 | 10.2 | 20.56 | 223 | -- | -- |
| 75.17 | 0.404 | 9.59 | 0.435 | 0.678 | 0.726 | -- | -- | -1.1 | 10.2 | 22.6 | 182 | -- | -- |
| 99.39 | 0.464 | 9.63 | 0.409 | -- | 1.55 | -- | 1.85 | -1.12 | -- | 20.53 | 354 | -- | -- |
| 79.2 | 0.417 | 9.61 | 0.308 | 0.643 | -- | -0.664 | -- | -1.19 | 9.78 | -- | -- | -- | -- |
| 80.88 | 0.421 | 9.61 | 0.282 | 0.646 | -- | -- | -- | -1.19 | 9.75 | -- | -- | -- | -- |
| 97.05 | 0.459 | 9.59 | 0.479 | -- | 0.72 | -- | -- | -1.03 | -- | 26.7 | 676 | -- | -- |
| 79.79 | 0.416 | 9.6 | -- | 0.682 | 0.572 | -- | -- | -1.17 | 9.93 | 22.6 | 187 | -- | -- |
| 105.74 | 0.481 | 9.62 | 0.276 | -- | -- | -- | -- | -1.19 | -- | -- | -- | -- | -- |
| 82.99 | 0.426 | 9.61 | -- | 0.645 | -- | -- | -- | -1.22 | 9.72 | -- | -- | -- | -- |
| 102.42 | 0.471 | 9.61 | -- | -- | 0.531 | -- | -- | -1.12 | -- | 26.7 | 665 | -- | -- |
| 107.76 | 0.485 | 9.63 | -- | -- | -- | -- | -- | -1.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.54 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 24 | 14 |
| 3 | 66.26 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 5 | 66.49 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 24 | 12 |
| 16 | 67.14 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 22 | 16 |
| 20 | 67.40 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 22 | 14 |
| 21 | 67.45 | temperature | 15.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 24 | 67.54 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 15 |
| 39 | 67.93 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 42 | 67.95 | temperature | 25.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 67 | 68.24 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 68 | 68.25 | temperature | 20.0 | 30 | > th | dose independent | rect. | 24 | 14 |
| 70 | 68.26 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 9 | 5 |
| 72 | 68.27 | wind | 5.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 78 | 68.31 | temperature | 25.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 101 | 68.58 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 5 |
| 109 | 68.63 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 122 | 68.80 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 11 |
| 127 | 68.83 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 150 | 68.95 | temperature | 20.0 | 30 | > th | dose independent | rect. | 24 | 12 |
| 177 | 69.12 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 178 | 69.12 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 9 |
| 193 | 69.18 | humidity | 90.0 | 30 | < th | dose independent | rect. | 9 | 5 |
| 198 | 69.19 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 211 | 69.25 | humidity | 90.0 | 30 | < th | dose independent | rect. | 9 | 7 |
| 217 | 69.26 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 17 |
| 245 | 69.39 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 12 |
| 260 | 69.45 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 268 | 69.47 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 299 | 69.60 | temperature | 25.0 | 10 | > th | dose independent | rect. | 22 | 16 |
| 301 | 69.62 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 3 |
| 329 | 69.73 | temperature | 25.0 | 270 | > th | dose independent | rect. | 21 | 9 |
| 335 | 69.75 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 360 | 69.86 | humidity | 60.0 | 10 | > th | dose independent | rect. | 5 | 13 |
| 376 | 69.90 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 416 | 70.02 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 439 | 70.11 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 9 | 5 |
| 450 | 70.13 | radiation | 1.0 | 30 | > th | dose independent | rect. | 16 | 17 |
| 454 | 70.14 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 469 | 70.18 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 473 | 70.19 | humidity | 90.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 474 | 70.19 | wind | 7.0 | 10 | < th | dose independent | rect. | 9 | 5 |
| 475 | 70.19 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 530 | 70.31 | temperature | 25.0 | 90 | > th | dose independent | rect. | 24 | 6 |
| 534 | 70.32 | temperature | 25.0 | 270 | < th | dose independent | sin | 9 | NA |
| 550 | 70.36 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 4 |
| 570 | 70.40 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 573 | 70.41 | wind | 7.0 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 613 | 70.49 | humidity | 90.0 | 30 | < th | dose independent | rect. | 9 | 3 |
| 614 | 70.49 | wind | 5.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 619 | 70.49 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 626 | 70.50 | wind | 7.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 627 | 70.50 | radiation | 1.0 | 30 | > th | dose independent | rect. | 14 | 19 |
| 658 | 70.56 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 3 |
| 677 | 70.60 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 678 | 70.60 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 683 | 70.61 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 696 | 70.64 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 727 | 70.70 | temperature | 25.0 | 270 | > th | dose independent | sin | 9 | NA |
| 733 | 70.71 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 6 | 8 |
| 747 | 70.73 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 751 | 70.74 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 9 | 3 |
| 766 | 70.76 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 773 | 70.77 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 4 |
| 802 | 70.81 | temperature | 25.0 | 720 | > th | dose independent | rect. | 24 | 1 |
| 871 | 70.89 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 892 | 70.91 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 930 | 70.96 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 985 | 71.02 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 13 | 23 |