BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0143700 Os08g0143700|AK106434
(350 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0143700 Protein of unknown function DUF676, hydrolase-... 727 0.0
Os03g0726800 Protein of unknown function DUF676, hydrolase-... 332 4e-91
Os02g0787100 Protein of unknown function DUF676, hydrolase-... 269 2e-72
Os08g0447300 Protein of unknown function DUF676, hydrolase-... 160 9e-40
Os02g0655600 Protein of unknown function DUF676, hydrolase-... 86 4e-17
>Os08g0143700 Protein of unknown function DUF676, hydrolase-like domain
containing protein
Length = 350
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/350 (100%), Positives = 350/350 (100%)
Query: 1 MGSIGGDEAAVLRAEESASGGVDVWSDAVSSHDPDHLLVMVHGILGSNADWQYAANEFVK 60
MGSIGGDEAAVLRAEESASGGVDVWSDAVSSHDPDHLLVMVHGILGSNADWQYAANEFVK
Sbjct: 1 MGSIGGDEAAVLRAEESASGGVDVWSDAVSSHDPDHLLVMVHGILGSNADWQYAANEFVK 60
Query: 61 QLPDDVIVHCSEKNINTLTLEGVDVMGERLADEVIDVIIRKPELTKISFLAHSVGGLAAR 120
QLPDDVIVHCSEKNINTLTLEGVDVMGERLADEVIDVIIRKPELTKISFLAHSVGGLAAR
Sbjct: 61 QLPDDVIVHCSEKNINTLTLEGVDVMGERLADEVIDVIIRKPELTKISFLAHSVGGLAAR 120
Query: 121 YAIAKLYRHPSDTSKSETKGTIGGLEAMNFITVATPHLGSRGNNQVPLLFGSIAMENFAS 180
YAIAKLYRHPSDTSKSETKGTIGGLEAMNFITVATPHLGSRGNNQVPLLFGSIAMENFAS
Sbjct: 121 YAIAKLYRHPSDTSKSETKGTIGGLEAMNFITVATPHLGSRGNNQVPLLFGSIAMENFAS 180
Query: 181 RVVHWIFRRTGKHLFLTDDDEGEPPLLQRMAEDYGDLYFISALHAFRRRVAYANADCDHI 240
RVVHWIFRRTGKHLFLTDDDEGEPPLLQRMAEDYGDLYFISALHAFRRRVAYANADCDHI
Sbjct: 181 RVVHWIFRRTGKHLFLTDDDEGEPPLLQRMAEDYGDLYFISALHAFRRRVAYANADCDHI 240
Query: 241 VGWRTSSIRRKTELPKWEESISEKYPHIVHEEYSEELGDETCQNSATVCDSDILEEKMVT 300
VGWRTSSIRRKTELPKWEESISEKYPHIVHEEYSEELGDETCQNSATVCDSDILEEKMVT
Sbjct: 241 VGWRTSSIRRKTELPKWEESISEKYPHIVHEEYSEELGDETCQNSATVCDSDILEEKMVT 300
Query: 301 GLRRVSWEKVDVSFHTSMQRFAAHSIIQVKYQFMNEGADVIQHIIDHFQV 350
GLRRVSWEKVDVSFHTSMQRFAAHSIIQVKYQFMNEGADVIQHIIDHFQV
Sbjct: 301 GLRRVSWEKVDVSFHTSMQRFAAHSIIQVKYQFMNEGADVIQHIIDHFQV 350
>Os03g0726800 Protein of unknown function DUF676, hydrolase-like domain
containing protein
Length = 386
Score = 332 bits (850), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 173/336 (51%), Positives = 225/336 (66%), Gaps = 25/336 (7%)
Query: 34 PDHLLVMVHGILGSNADWQYAANEFVKQLPDDVIVHCSEKNINTLTLEGVDVMGERLADE 93
P HL+V V+GI+GS +W+YAA F+K+ P+DV+VHCS N T +GVDVMG RLA+E
Sbjct: 53 PTHLVVTVNGIVGSAENWRYAAKHFIKKHPEDVVVHCSGCNGAVRTFDGVDVMGTRLAEE 112
Query: 94 VIDVIIRKPELTKISFLAHSVGGLAARYAIAKLYRHPSDTSKSET--------------- 138
V+ ++ R+PEL KISF+AHS+GGL ARYAIA LY+ ++ E
Sbjct: 113 VLSLVQRRPELQKISFVAHSLGGLIARYAIALLYKSATEIDSHEEHEKQITDVSSNQLID 172
Query: 139 KGTIGGLEAMNFITVATPHLGSRGNNQVPLLFGSIAMENFASRVVHWIFRRTGKHLFLTD 198
+G I GLE +NFIT ATPHLG+R + Q+PLL GS +E A R + WI R+GKHLFL D
Sbjct: 173 RGKIAGLEPINFITFATPHLGTRSHKQIPLLRGSYKLEKMAYR-ISWIAGRSGKHLFLKD 231
Query: 199 DDEGEPPLLQRMAEDYGDLYFISALHAFRRRVAYANADCDHIVGWRTSSIRRKTELPKWE 258
++G+PPLL +M DYGDL+F+SAL +F+RRVAY+N D IVGWRTSSIR + ELPK +
Sbjct: 232 IEDGKPPLLLQMVTDYGDLHFMSALRSFKRRVAYSNICNDFIVGWRTSSIRHQHELPKPQ 291
Query: 259 ESISE-KYPHIVHEEYSE----ELGDETCQNSATVCDSDILEEKMVTGLRRVSWEKVDVS 313
I+ KYPH+V+ E + + D + + +EE M+ GL R+ WE+VDVS
Sbjct: 292 NFINHVKYPHVVYVEKPKVQDTDFSDSMIYQAKNTSE---MEELMLKGLNRIPWERVDVS 348
Query: 314 FHTSMQRFAAHSIIQVKYQFMN-EGADVIQHIIDHF 348
F S QR AHS IQVK F N +GADVI H+IDHF
Sbjct: 349 FKKSRQRIFAHSTIQVKTYFFNSDGADVIFHMIDHF 384
>Os02g0787100 Protein of unknown function DUF676, hydrolase-like domain
containing protein
Length = 432
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/315 (48%), Positives = 196/315 (62%), Gaps = 46/315 (14%)
Query: 35 DHLLVMVHGILGSNADWQYAANEFVKQLPDDVIVHCSEKNINTLTLEGVDVMGERLADEV 94
DHL+VMV+G+ GS+ADW++AA +FVK+LP V VH S+ N + LT +GVD+MGERLA+EV
Sbjct: 135 DHLVVMVNGLYGSSADWKFAAEQFVKRLPGKVFVHRSQCNHSKLTYDGVDLMGERLAEEV 194
Query: 95 IDVIIRKPELTKISFLAHSVGGLAARYAIAKLY------------RHPSDTSKSETKGTI 142
V+ R+ L KISF+AHS+GGL RYAI KLY + S+ ++ G I
Sbjct: 195 RQVVQRRSNLQKISFVAHSLGGLVTRYAIGKLYDPSINEEASLDKENFSNELRTSDGGKI 254
Query: 143 GGLEAMNFITVATPHLGSRGNNQVPLLFGSIAMENFASRVVHWIFRRTGKHLFLTDDDEG 202
GLE +NFI VATPHLGSR N Q+P LFG +E A+ H+I RTGKHLFLTD D+G
Sbjct: 255 AGLEPINFIAVATPHLGSRWNKQLPFLFGVPLLERTAAVTAHFIVGRTGKHLFLTDSDDG 314
Query: 203 EPPLLQRMAEDYGDLYFISALHAFRRRVAYANADCDHIVGWRTSSIRRKTELPKWEESIS 262
+PPLL RMAED D F+SAL +F+RRVAYAN T S
Sbjct: 315 KPPLLLRMAEDCDDGKFMSALRSFKRRVAYANLQL-------TPS--------------D 353
Query: 263 EKYPHIVH------EEYSEELGDETCQNSATVCDSDILEEKMVTGLRRVSWEKVDVSFHT 316
+KYPHI+H E + +E E+ + S T D +EE M+ GL +V WE+VDV FH
Sbjct: 354 KKYPHIIHVDKGNSEHHQQE---ESVEASLT----DSMEEVMIHGLTQVPWERVDVCFHK 406
Query: 317 SMQRFAAHSIIQVKY 331
S R+ AH IQ+ +
Sbjct: 407 SWLRYNAHHNIQILF 421
>Os08g0447300 Protein of unknown function DUF676, hydrolase-like domain
containing protein
Length = 315
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 116/171 (67%), Gaps = 17/171 (9%)
Query: 15 EESASGGVDVWSD------AVSSHDPDHLLVMVHGILGSNADWQYAANEFVKQLPDDVIV 68
E + GG DVWS A P+HL+VMV+G++GS DW++AA +FV+++P+ VIV
Sbjct: 65 EPARGGGEDVWSAQAEAEVAQGGGFPEHLVVMVNGLVGSADDWKFAAEQFVRRMPEKVIV 124
Query: 69 HCSEKNINTLTLEGVDVMGERLADEVIDVIIRKPELTKISFLAHSVGGLAARYAIAKLYR 128
H S+ N T T +GVD+MGERLA+EV+ V+ ++ + KISF+AHS+GGL ARYAI +LY
Sbjct: 125 HRSQCNSATQTFDGVDLMGERLANEVLSVVEQRRGVKKISFVAHSLGGLVARYAIGRLY- 183
Query: 129 HPSDTSKSET----------KGTIGGLEAMNFITVATPHLGSRGNNQVPLL 169
P++ +KS + +G I GLE MNFIT A+PHLGS GN Q LL
Sbjct: 184 EPNNKTKSSSEKSRDEGERLEGFIAGLEPMNFITFASPHLGSSGNKQHRLL 234
>Os02g0655600 Protein of unknown function DUF676, hydrolase-like domain
containing protein
Length = 138
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Query: 33 DPDHLLVMVHGILGSNADWQYAANEFVKQLPDDVIVHCSEKNINTLTLEGVDVMGERLAD 92
+PDHL+VMVHGI+GS ADW++ A +F K L D VIVH S +N+ LTL+GVDVMGERLA
Sbjct: 29 EPDHLVVMVHGIVGSAADWKFGAEQFEKLLSDKVIVHRSNRNMYKLTLDGVDVMGERLAQ 88
Query: 93 EVIDVIIRKP 102
E +++KP
Sbjct: 89 EK-GRLLKKP 97
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,355,516
Number of extensions: 516649
Number of successful extensions: 1261
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1251
Number of HSP's successfully gapped: 5
Length of query: 350
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 248
Effective length of database: 11,709,973
Effective search space: 2904073304
Effective search space used: 2904073304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)