BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0690200 Os07g0690200|AK108269
(88 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0690200 Conserved hypothetical protein 176 4e-45
Os03g0302500 Conserved hypothetical protein 77 2e-15
Os05g0356800 Conserved hypothetical protein 74 2e-14
Os01g0306200 Conserved hypothetical protein 65 1e-11
Os03g0831400 Conserved hypothetical protein 63 5e-11
>Os07g0690200 Conserved hypothetical protein
Length = 88
Score = 176 bits (445), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MAPSYRPYSGEYQYGNGNAVVPYGGGGERRMKAVCRWVPGAWWLSDPEMKRRRRVAGYKS 60
MAPSYRPYSGEYQYGNGNAVVPYGGGGERRMKAVCRWVPGAWWLSDPEMKRRRRVAGYKS
Sbjct: 1 MAPSYRPYSGEYQYGNGNAVVPYGGGGERRMKAVCRWVPGAWWLSDPEMKRRRRVAGYKS 60
Query: 61 YAVEGKVKASIRRGLRWIKAKCSHIVRR 88
YAVEGKVKASIRRGLRWIKAKCSHIVRR
Sbjct: 61 YAVEGKVKASIRRGLRWIKAKCSHIVRR 88
>Os03g0302500 Conserved hypothetical protein
Length = 120
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 41/47 (87%)
Query: 40 GAWWLSDPEMKRRRRVAGYKSYAVEGKVKASIRRGLRWIKAKCSHIV 86
AW SDPEMKRRRRVA YK+Y+VEGKVK+S+RRG RWIKAKCS ++
Sbjct: 72 SAWCFSDPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIKAKCSELI 118
>Os05g0356800 Conserved hypothetical protein
Length = 159
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 38/45 (84%)
Query: 42 WWLSDPEMKRRRRVAGYKSYAVEGKVKASIRRGLRWIKAKCSHIV 86
W SDPEMKRRRRVA YK+Y+VEGK+KAS+RRGLRW K KCS I
Sbjct: 112 WCFSDPEMKRRRRVASYKAYSVEGKMKASLRRGLRWFKGKCSEIF 156
>Os01g0306200 Conserved hypothetical protein
Length = 82
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%)
Query: 38 VPGAWWLSDPEMKRRRRVAGYKSYAVEGKVKASIRRGLRWIKAKCSHIVR 87
+ A D E KRRRRVA YK+YAVEGKVKAS+RRG+RW K KCS I R
Sbjct: 32 ISCAGCFGDAESKRRRRVAVYKAYAVEGKVKASLRRGIRWFKRKCSAIFR 81
>Os03g0831400 Conserved hypothetical protein
Length = 74
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 26 GGERRMKAVCRWVPGAWWLSDPEMKRRRRVAGYKSYAVEGKVKASIRRGLRWIKAK 81
G+ R A P WW DPE KRRRRVA YK+YAVE +VKAS+RRG RWIK +
Sbjct: 16 DGDERTVASSSSTP--WWSGDPEAKRRRRVAAYKAYAVEARVKASLRRGFRWIKDR 69
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,974,611
Number of extensions: 175994
Number of successful extensions: 586
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 6
Length of query: 88
Length of database: 17,035,801
Length adjustment: 58
Effective length of query: 30
Effective length of database: 14,007,389
Effective search space: 420221670
Effective search space used: 420221670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)