Os05g0356800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0356800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.04 | 0.257 | 9.31 | -0.289 | 0.377 | 0.386 | 0.312 | -1.36 | -0.295 | 1.65 | 26 | 742 | -- | -- |
| 32.01 | 0.263 | 9.27 | 0.0477 | 0.398 | 0.285 | 0.0852 | -- | -0.163 | 0.285 | 26.89 | 2413 | -- | -- |
| 30.38 | 0.257 | 9.31 | -0.28 | 0.387 | 0.381 | -- | -1.28 | -0.291 | 1.71 | 26.11 | 720 | -- | -- |
| 31.88 | 0.263 | 9.26 | 0.0285 | 0.428 | 0.282 | -- | -- | -0.144 | 0.0959 | 26.86 | 3055 | -- | -- |
| 37.04 | 0.283 | 9.32 | -0.362 | -- | 0.598 | -- | -1.32 | -0.36 | -- | 26.1 | 914 | -- | -- |
| 34.87 | 0.277 | 9.25 | 0.143 | 0.454 | -- | 0.107 | -- | -0.0985 | 0.2 | -- | -- | -- | -- |
| 34.92 | 0.277 | 9.25 | 0.139 | 0.454 | -- | -- | -- | -0.0989 | 0.165 | -- | -- | -- | -- |
| 39.19 | 0.292 | 9.28 | 0.00849 | -- | 0.484 | -- | -- | -0.267 | -- | 25.5 | 925 | -- | -- |
| 31.9 | 0.263 | 9.26 | -- | 0.426 | 0.289 | -- | -- | -0.148 | 0.115 | 26.84 | 3060 | -- | -- |
| 47.89 | 0.323 | 9.24 | 0.154 | -- | -- | -- | -- | -0.0922 | -- | -- | -- | -- | -- |
| 35.43 | 0.278 | 9.26 | -- | 0.456 | -- | -- | -- | -0.114 | 0.182 | -- | -- | -- | -- |
| 39.15 | 0.291 | 9.28 | -- | -- | 0.479 | -- | -- | -0.262 | -- | 25.6 | 900 | -- | -- |
| 48.52 | 0.325 | 9.25 | -- | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 2 | 28.97 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |
| 5 | 29.34 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 5 |
| 9 | 29.37 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 10 |
| 10 | 29.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 5 |
| 18 | 29.53 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 1 |
| 20 | 29.55 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 24 | 29.58 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 41 | 29.63 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 3 |
| 43 | 29.65 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 44 | 29.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 9 |
| 48 | 29.68 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 3 |
| 62 | 29.74 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 14 |
| 79 | 29.78 | temperature | 25 | 720 | > th | dose dependent | sin | 16 | NA |
| 81 | 29.79 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 12 |
| 83 | 29.80 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 21 |
| 95 | 29.85 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 16 |
| 100 | 29.87 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 1 |
| 111 | 29.89 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 11 |
| 122 | 29.93 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 127 | 29.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 11 |
| 136 | 29.95 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 8 |
| 151 | 29.96 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 155 | 29.97 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 162 | 29.99 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 7 |
| 179 | 30.00 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 8 |
| 213 | 30.05 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 17 |
| 226 | 30.06 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 20 |
| 232 | 30.07 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 247 | 30.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 20 |
| 252 | 30.08 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 11 |
| 301 | 30.15 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 14 |
| 321 | 30.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 376 | 30.24 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 17 |
| 435 | 30.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 7 |
| 444 | 30.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 5 |
| 510 | 30.40 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 2 |
| 513 | 30.40 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 22 |
| 518 | 30.41 | humidity | 90 | 720 | < th | dose independent | rect. | 17 | 2 |
| 581 | 30.47 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 596 | 30.49 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 21 |
| 624 | 30.52 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 23 |
| 658 | 30.55 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 14 |
| 710 | 30.59 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 714 | 30.59 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 723 | 30.59 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 22 |
| 730 | 30.60 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 769 | 30.62 | radiation | 1 | 720 | > th | dose independent | sin | 19 | NA |
| 776 | 30.62 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 23 |
| 803 | 30.64 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 804 | 30.64 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 830 | 30.65 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 8 |
| 838 | 30.66 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 892 | 30.69 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 893 | 30.69 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 900 | 30.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 915 | 30.71 | atmosphere | 995 | 43200 | > th | dose independent | sin | 16 | NA |
| 941 | 30.71 | temperature | 20 | 10 | > th | dose dependent | sin | 14 | NA |
| 952 | 30.71 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 974 | 30.73 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 23 |
| 984 | 30.74 | atmosphere | 995 | 43200 | < th | dose independent | sin | 16 | NA |
| 994 | 30.75 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |