BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0356800 Os05g0356800|AK121901
(159 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0356800 Conserved hypothetical protein 196 9e-51
Os03g0302500 Conserved hypothetical protein 90 7e-19
Os07g0690200 Conserved hypothetical protein 74 4e-14
Os01g0306200 Conserved hypothetical protein 74 5e-14
>Os05g0356800 Conserved hypothetical protein
Length = 159
Score = 196 bits (497), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 105/159 (66%), Positives = 105/159 (66%)
Query: 1 MADYHRPYRSDLDLRXXXXXXXXXXXXXXNGYYLPXXXXXXPTANGYFSSKGTGGFAANG 60
MADYHRPYRSDLDLR NGYYLP PTANGYFSSKGTGGFAANG
Sbjct: 1 MADYHRPYRSDLDLRPPPPPPSSASFPHSNGYYLPSSSSSSPTANGYFSSKGTGGFAANG 60
Query: 61 DRRIEIYTTXXXXXXXXXXXXXXXXXXGRRDGYLXXXXXXXXXXXXXXXXMWCFSDPEMK 120
DRRIEIYTT GRRDGYL MWCFSDPEMK
Sbjct: 61 DRRIEIYTTAPPPPLPPPPRLALPPPPGRRDGYLGGGGAGGGGGGGGSGGMWCFSDPEMK 120
Query: 121 RRRRVASYKAYSVEGKMKASLRRGLRWFKGKCSEIFHGW 159
RRRRVASYKAYSVEGKMKASLRRGLRWFKGKCSEIFHGW
Sbjct: 121 RRRRVASYKAYSVEGKMKASLRRGLRWFKGKCSEIFHGW 159
>Os03g0302500 Conserved hypothetical protein
Length = 120
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 40/47 (85%), Positives = 43/47 (91%)
Query: 112 WCFSDPEMKRRRRVASYKAYSVEGKMKASLRRGLRWFKGKCSEIFHG 158
WCFSDPEMKRRRRVASYKAYSVEGK+K+SLRRG RW K KCSE+ HG
Sbjct: 74 WCFSDPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIKAKCSELIHG 120
>Os07g0690200 Conserved hypothetical protein
Length = 88
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 38/45 (84%)
Query: 112 WCFSDPEMKRRRRVASYKAYSVEGKMKASLRRGLRWFKGKCSEIF 156
W SDPEMKRRRRVA YK+Y+VEGK+KAS+RRGLRW K KCS I
Sbjct: 42 WWLSDPEMKRRRRVAGYKSYAVEGKVKASIRRGLRWIKAKCSHIV 86
>Os01g0306200 Conserved hypothetical protein
Length = 82
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 38/45 (84%)
Query: 113 CFSDPEMKRRRRVASYKAYSVEGKMKASLRRGLRWFKGKCSEIFH 157
CF D E KRRRRVA YKAY+VEGK+KASLRRG+RWFK KCS IF
Sbjct: 37 CFGDAESKRRRRVAVYKAYAVEGKVKASLRRGIRWFKRKCSAIFR 81
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.140 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,821,286
Number of extensions: 95168
Number of successful extensions: 170
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 4
Length of query: 159
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 66
Effective length of database: 12,179,899
Effective search space: 803873334
Effective search space used: 803873334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)