Os07g0690200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0690200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.9 | 0.373 | 9.35 | -1.13 | 0.712 | 1.21 | -0.204 | -3.59 | -0.129 | 4.98 | 24.01 | 1003 | -- | -- |
| 67.81 | 0.384 | 9.26 | -0.348 | 0.762 | 0.971 | -0.129 | -- | 0.0525 | 4.75 | 22.65 | 921 | -- | -- |
| 62.62 | 0.369 | 9.37 | -1.28 | 0.651 | 1.2 | -- | -4.11 | -0.158 | 4.58 | 24.5 | 1113 | -- | -- |
| 67.67 | 0.383 | 9.26 | -0.309 | 0.769 | 0.923 | -- | -- | 0.0499 | 4.81 | 22.31 | 893 | -- | -- |
| 83.7 | 0.426 | 9.38 | -1.32 | -- | 1.3 | -- | -3.94 | -0.178 | -- | 24.1 | 1172 | -- | -- |
| 88.26 | 0.44 | 9.23 | -0.0553 | 0.748 | -- | 0.039 | -- | 0.212 | 3.52 | -- | -- | -- | -- |
| 88.27 | 0.44 | 9.23 | -0.0559 | 0.749 | -- | -- | -- | 0.212 | 3.53 | -- | -- | -- | -- |
| 90.06 | 0.442 | 9.27 | -0.342 | -- | 0.958 | -- | -- | 0.0235 | -- | 21.42 | 1163 | -- | -- |
| 70.08 | 0.39 | 9.25 | -- | 0.747 | 0.847 | -- | -- | 0.0791 | 4.69 | 21.59 | 903 | -- | -- |
| 119.58 | 0.511 | 9.23 | -0.0244 | -- | -- | -- | -- | 0.232 | -- | -- | -- | -- | -- |
| 88.35 | 0.44 | 9.23 | -- | 0.748 | -- | -- | -- | 0.218 | 3.53 | -- | -- | -- | -- |
| 92.69 | 0.448 | 9.26 | -- | -- | 0.86 | -- | -- | 0.0957 | -- | 22.73 | 1154 | -- | -- |
| 119.6 | 0.51 | 9.23 | -- | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 2 | 58.90 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 8 | 59.15 | temperature | 20 | 720 | > th | dose dependent | sin | 17 | NA |
| 11 | 59.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 17 | 59.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 34 | 59.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 38 | 59.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 50 | 59.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 57 | 59.97 | temperature | 20 | 10 | > th | dose dependent | sin | 12 | NA |
| 98 | 60.49 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 130 | 60.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 144 | 60.88 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 8 |
| 155 | 60.93 | temperature | 30 | 10 | < th | dose dependent | sin | 12 | NA |
| 195 | 61.22 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 202 | 61.25 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 9 |
| 247 | 61.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 14 |
| 256 | 61.64 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 12 |
| 268 | 61.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 283 | 61.82 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 14 |
| 337 | 62.08 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 561 | 63.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 16 |
| 813 | 64.43 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |