BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0690200 Os07g0690200|AK108269
(88 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G47480.1 | chr2:19484207-19484539 REVERSE LENGTH=111 64 1e-11
AT3G62640.1 | chr3:23166511-23166843 REVERSE LENGTH=111 61 1e-10
AT5G11970.1 | chr5:3863289-3863606 REVERSE LENGTH=106 58 1e-09
AT3G05725.1 | chr3:1692548-1693153 FORWARD LENGTH=125 57 1e-09
AT2G19460.1 | chr2:8431581-8431931 FORWARD LENGTH=117 56 3e-09
AT3G13910.1 | chr3:4591124-4591432 REVERSE LENGTH=103 54 2e-08
AT4G09890.1 | chr4:6218501-6218764 FORWARD LENGTH=88 50 2e-07
AT1G72720.1 | chr1:27376903-27377286 REVERSE LENGTH=128 48 1e-06
>AT2G47480.1 | chr2:19484207-19484539 REVERSE LENGTH=111
Length = 110
Score = 63.9 bits (154), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 36/45 (80%)
Query: 44 LSDPEMKRRRRVAGYKSYAVEGKVKASIRRGLRWIKAKCSHIVRR 88
LSD EMKR++R+A YK+Y VEGKVK++++ G RWIK KC IV R
Sbjct: 65 LSDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHR 109
>AT3G62640.1 | chr3:23166511-23166843 REVERSE LENGTH=111
Length = 110
Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 9/84 (10%)
Query: 4 SYRPYSGEYQYGNGNAVVPYGGGGERRMKAVCRWVPGAWWLSDPEMKRRRRVAGYKSYAV 63
S RP S ++Q + P G + R A W L D E KR++R+A YK+YA+
Sbjct: 35 STRPDSPKFQ---PSIPPPPGSTSKTRTTAT------PWRLIDAETKRKKRIATYKTYAL 85
Query: 64 EGKVKASIRRGLRWIKAKCSHIVR 87
EGKVK+++++G WIK + SHI+
Sbjct: 86 EGKVKSTVKKGFHWIKDRYSHIIH 109
>AT5G11970.1 | chr5:3863289-3863606 REVERSE LENGTH=106
Length = 105
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 29 RRMKAVCRWVPGAWWLSDPEMKRRRRVAGYKSYAVEGKVKASIRRGLRWIKAKCSHIV 86
++ K++ R +W ++DPE++R++RVA YK Y VEGKVK S R RW+K + + +V
Sbjct: 46 KKEKSIAR--SKSWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVV 101
>AT3G05725.1 | chr3:1692548-1693153 FORWARD LENGTH=125
Length = 124
Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 42 WWLSDPEMKRRRRVAGYKSYAVEGKVKASIRRGLRWIKAKCSHIV 86
WW +DPE+KR+RRVA YK Y+ EGK+K ++R+ +WIK +CS I+
Sbjct: 78 WW-NDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKII 121
>AT2G19460.1 | chr2:8431581-8431931 FORWARD LENGTH=117
Length = 116
Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 42 WWLSDPEMKRRRRVAGYKSYAVEGKVKASIRRGLRWIKAKCSHIV 86
W DP+++R++RV Y++Y VEGK+K S R+ +WIK KC+ ++
Sbjct: 71 WGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLL 115
>AT3G13910.1 | chr3:4591124-4591432 REVERSE LENGTH=103
Length = 102
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 41 AWWLSDPEMKRRRRVAGYKSYAVEGKVKASIRRGLRWIK 79
+W SDPE +R+RRVAGYK Y+VE K+K SIR+ +W K
Sbjct: 58 SWSFSDPESRRKRRVAGYKVYSVEQKMKGSIRKSFKWFK 96
>AT4G09890.1 | chr4:6218501-6218764 FORWARD LENGTH=88
Length = 87
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 45 SDPEMKRRRRVAGYKSYAVEGKVKASIRRGLRWIKAKCS 83
+DPEMKR++RVA Y +A E K+K++++ +WIK K S
Sbjct: 39 TDPEMKRKKRVASYNLFATEEKLKSTLKNSFKWIKNKFS 77
>AT1G72720.1 | chr1:27376903-27377286 REVERSE LENGTH=128
Length = 127
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 44 LSDPEMKRRRRVAGYKSYAVEGKVKASIRRGLRWIKAKCSHIV 86
L + E++R++RVA Y Y VEG+VK S+++ +W K CS+ V
Sbjct: 81 LCEAEIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAV 123
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,265,667
Number of extensions: 86702
Number of successful extensions: 185
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 8
Length of query: 88
Length of database: 11,106,569
Length adjustment: 59
Effective length of query: 29
Effective length of database: 9,489,025
Effective search space: 275181725
Effective search space used: 275181725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)