Os01g0306200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0306200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 421.71 | 0.965 | 3.58 | 2.03 | 0.743 | 2.92 | 1.55 | 13.2 | -0.0843 | 13.5 | 4.994 | 4326 | 20 | 4 |
| 551.49 | 1.09 | 3.52 | 2.53 | 0.729 | 2.66 | 1.68 | -- | -0.00511 | 13.1 | 4.301 | 10641 | 20 | 3.99 |
| 431.11 | 0.967 | 3.58 | 2.08 | 0.733 | 2.93 | -- | 13.2 | -0.0776 | 13.3 | 5.024 | 4228 | 20 | 3.98 |
| 459.71 | 0.999 | 3.49 | 2.21 | 0.751 | 2.93 | -- | -- | 0.1 | 13.3 | 5.025 | 10533 | 20.3 | 0.242 |
| 464.21 | 1 | 3.58 | 2.07 | -- | 2.92 | -- | 13.2 | -0.0873 | -- | 5.048 | 4087 | 20 | 3.93 |
| 631.38 | 1.18 | 3.53 | 1.87 | 0.752 | -- | 1.4 | -- | -0.22 | 13.1 | -- | -- | -- | -- |
| 639.52 | 1.18 | 3.52 | 1.92 | 0.749 | -- | -- | -- | -0.213 | 13 | -- | -- | -- | -- |
| 484.81 | 1.03 | 3.51 | 1.9 | -- | 2.86 | -- | -- | 0.045 | -- | 4.7 | 10296 | 20.4 | 0.144 |
| 542.24 | 1.08 | 3.47 | -- | 0.71 | 3.11 | -- | -- | -0.041 | 12.6 | 5.105 | 9570 | 20.2 | 0.333 |
| 674.45 | 1.21 | 3.53 | 1.89 | -- | -- | -- | -- | -0.227 | -- | -- | -- | -- | -- |
| 736.53 | 1.27 | 3.57 | -- | 0.718 | -- | -- | -- | -0.426 | 12.9 | -- | -- | -- | -- |
| 568.46 | 1.11 | 3.48 | -- | -- | 2.62 | -- | -- | -0.0806 | -- | 5.591 | 9472 | 20.2 | 0.314 |
| 768.73 | 1.29 | 3.58 | -- | -- | -- | -- | -- | -0.437 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 421.77 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 7 | 433.53 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 9 | 434.77 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 11 | 434.96 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 17 | 436.43 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 21 | 436.90 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 22 | 437.19 | wind | 7.0 | 4320 | > th | dose independent | rect. | 19 | 8 |
| 39 | 439.44 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 99 | 445.46 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 109 | 445.66 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 133 | 445.94 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 134 | 446.00 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 174 | 450.40 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 202 | 450.46 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 204 | 450.53 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 206 | 450.58 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 213 | 451.01 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 9 | 12 |
| 215 | 451.07 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 273 | 453.52 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 355 | 457.60 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 357 | 457.86 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 397 | 460.64 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 400 | 461.02 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 404 | 461.22 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 24 | 4 |
| 408 | 461.89 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 7 |
| 412 | 462.42 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 416 | 463.43 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 436 | 464.91 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 438 | 465.17 | temperature | 20.0 | 720 | < th | dose independent | rect. | 10 | 10 |
| 439 | 465.17 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 446 | 465.49 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 447 | 465.50 | temperature | 20.0 | 720 | < th | dose independent | rect. | 18 | 2 |
| 467 | 466.03 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 9 |
| 479 | 466.80 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 507 | 469.20 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 508 | 469.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 589 | 473.48 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 590 | 473.50 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 627 | 474.90 | wind | 5.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 639 | 475.42 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 665 | 476.29 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 20 | 20 |
| 673 | 476.44 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 680 | 476.61 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 22 | NA |
| 729 | 479.37 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 730 | 479.40 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 8 |
| 740 | 479.73 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 23 | NA |
| 745 | 479.91 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 748 | 479.95 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 749 | 480.01 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 766 | 480.75 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 1 | 5 |
| 793 | 481.81 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 3 | NA |
| 846 | 482.95 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 21 | 3 |
| 918 | 484.35 | wind | 5.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 921 | 484.42 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 941 | 484.75 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 946 | 484.88 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 947 | 484.90 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 9 |
| 976 | 485.22 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 992 | 485.34 | temperature | 20.0 | 720 | > th | dose independent | sin | 21 | NA |