Os03g0831400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0831400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.3 | 0.491 | 5.53 | 2.1 | 0.591 | -1.13 | 0.333 | -1.25 | 0.316 | 22.1 | 40 | 2808 | -- | -- |
| 110.67 | 0.49 | 5.53 | 2.22 | 0.599 | -1.16 | 0.223 | -- | 0.35 | 22.2 | 38.18 | 2807 | -- | -- |
| 109.68 | 0.488 | 5.53 | 2.09 | 0.598 | -1.09 | -- | -1.21 | 0.333 | 22.2 | 38.64 | 2797 | -- | -- |
| 110.21 | 0.489 | 5.52 | 2.23 | 0.623 | -1.02 | -- | -- | 0.376 | 22.2 | 30 | 2736 | -- | -- |
| 129.38 | 0.53 | 5.52 | 2.07 | -- | -0.937 | -- | -1.16 | 0.293 | -- | 36.67 | 3006 | -- | -- |
| 139.61 | 0.554 | 5.55 | 2.19 | 0.496 | -- | 0.305 | -- | 0.229 | 21.7 | -- | -- | -- | -- |
| 139.93 | 0.554 | 5.55 | 2.18 | 0.493 | -- | -- | -- | 0.228 | 21.8 | -- | -- | -- | -- |
| 130.41 | 0.532 | 5.51 | 2.21 | -- | -0.877 | -- | -- | 0.337 | -- | 30 | 2913 | -- | -- |
| 175.24 | 0.617 | 5.62 | -- | 0.431 | -1.62 | -- | -- | -0.141 | 22.5 | 55.01 | 23658 | -- | -- |
| 154.45 | 0.581 | 5.54 | 2.19 | -- | -- | -- | -- | 0.227 | -- | -- | -- | -- | -- |
| 265.17 | 0.762 | 5.61 | -- | 0.501 | -- | -- | -- | -0.0153 | 22.2 | -- | -- | -- | -- |
| 188.67 | 0.64 | 5.6 | -- | -- | -1.75 | -- | -- | -0.0823 | -- | 54.06 | 25974 | -- | -- |
| 280.4 | 0.782 | 5.59 | -- | -- | -- | -- | -- | -0.0151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.76 | wind | 5 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 4 | 110.21 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 5 | 110.36 | wind | 7 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 11 | 110.61 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 4 |
| 40 | 111.92 | radiation | 40 | 1440 | > th | dose dependent | rect. | 14 | 21 |
| 42 | 112.02 | radiation | 40 | 1440 | > th | dose dependent | sin | 12 | NA |
| 44 | 112.12 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 51 | 112.61 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 53 | 112.64 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 55 | 112.65 | wind | 3 | 43200 | > th | dose dependent | rect. | 1 | 10 |
| 61 | 112.77 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 63 | 112.79 | radiation | 40 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 87 | 112.87 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 89 | 112.93 | radiation | 40 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 100 | 113.10 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 133 | 113.37 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 136 | 113.41 | radiation | 40 | 1440 | > th | dose independent | sin | 12 | NA |
| 137 | 113.41 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 143 | 113.45 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 167 | 113.59 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 168 | 113.59 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 170 | 113.62 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 209 | 113.78 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 213 | 113.80 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 218 | 113.82 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 223 | 113.84 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 227 | 113.87 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 242 | 113.94 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 10 |
| 246 | 113.96 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 258 | 113.98 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 3 |
| 275 | 114.00 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 280 | 114.02 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 4 |
| 364 | 114.23 | wind | 3 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 366 | 114.24 | temperature | 30 | 14400 | > th | dose dependent | sin | 13 | NA |
| 367 | 114.24 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 395 | 114.30 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 18 |
| 419 | 114.37 | radiation | 40 | 1440 | < th | dose independent | sin | 12 | NA |
| 436 | 114.41 | wind | 3 | 43200 | > th | dose dependent | sin | 7 | NA |
| 447 | 114.45 | radiation | 10 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 454 | 114.48 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 476 | 114.52 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 483 | 114.54 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 547 | 114.63 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 557 | 114.66 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 573 | 114.69 | radiation | 1 | 1440 | > th | dose dependent | sin | 11 | NA |
| 580 | 114.70 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 18 |
| 711 | 114.83 | wind | 5 | 43200 | < th | dose independent | sin | 7 | NA |
| 715 | 114.84 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 721 | 114.85 | radiation | 10 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 753 | 114.87 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 758 | 114.88 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 768 | 114.88 | radiation | 40 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 788 | 114.89 | radiation | 40 | 1440 | > th | dose dependent | no | NA | NA |
| 861 | 114.89 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 987 | 114.94 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 988 | 114.94 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 3 |