BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0683600 Os07g0683600|009-063-E08
(124 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0683600 Ricin B-related lectin domain containing protein 233 3e-62
Os07g0683900 Ricin B-related lectin domain containing protein 202 5e-53
Os07g0684000 Ricin B-related lectin domain containing protein 201 7e-53
Os03g0327600 Ricin B-related lectin domain containing protein 198 8e-52
Os01g0104400 Ricin B-related lectin domain containing protein 197 2e-51
Os03g0325900 128 1e-30
Os03g0325700 Ricin B-related lectin domain containing protein 108 1e-24
>Os07g0683600 Ricin B-related lectin domain containing protein
Length = 124
Score = 233 bits (593), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 112/124 (90%), Positives = 112/124 (90%)
Query: 1 MFKSDLQHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLD 60
MFKSDLQHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLD
Sbjct: 1 MFKSDLQHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLD 60
Query: 61 ESVLWTESKDVGHGFRCVRMVNNIYLNFDAFXXXXXXXXXXXXTTVVLWEWCKGDNQRWK 120
ESVLWTESKDVGHGFRCVRMVNNIYLNFDAF TTVVLWEWCKGDNQRWK
Sbjct: 61 ESVLWTESKDVGHGFRCVRMVNNIYLNFDAFHGDKDHGGVHDGTTVVLWEWCKGDNQRWK 120
Query: 121 ILPW 124
ILPW
Sbjct: 121 ILPW 124
>Os07g0683900 Ricin B-related lectin domain containing protein
Length = 343
Score = 202 bits (514), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 92/122 (75%), Positives = 100/122 (81%)
Query: 3 KSDLQHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLDES 62
+ D QHW+KDMRHS I+DEEGYPAFALVNK TGEAIKHS GQ HPV+LVPYNPEY DES
Sbjct: 222 RDDYQHWIKDMRHSNKIRDEEGYPAFALVNKVTGEAIKHSTGQGHPVKLVPYNPEYQDES 281
Query: 63 VLWTESKDVGHGFRCVRMVNNIYLNFDAFXXXXXXXXXXXXTTVVLWEWCKGDNQRWKIL 122
VLWTESKDVG GFRC+RMVNNIYLNFDAF T +VLW+WC+GDNQRWKIL
Sbjct: 282 VLWTESKDVGKGFRCIRMVNNIYLNFDAFHGDKDHGGIHDGTEIVLWKWCEGDNQRWKIL 341
Query: 123 PW 124
PW
Sbjct: 342 PW 343
Score = 186 bits (473), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 89/122 (72%), Positives = 95/122 (77%)
Query: 3 KSDLQHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLDES 62
K + QHW KDMR ST +KD EG PAFALVNKATG A+KHSLGQSHPV+LVP+NPEY D S
Sbjct: 49 KDEHQHWFKDMRFSTKVKDGEGMPAFALVNKATGLAVKHSLGQSHPVKLVPFNPEYEDAS 108
Query: 63 VLWTESKDVGHGFRCVRMVNNIYLNFDAFXXXXXXXXXXXXTTVVLWEWCKGDNQRWKIL 122
VLWTESKDVG GFRC+RMVNN LN DAF TTVVLWEWCKGDNQ WKIL
Sbjct: 109 VLWTESKDVGKGFRCIRMVNNTRLNLDAFHGDKDHGGVRDGTTVVLWEWCKGDNQSWKIL 168
Query: 123 PW 124
PW
Sbjct: 169 PW 170
>Os07g0684000 Ricin B-related lectin domain containing protein
Length = 204
Score = 201 bits (512), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 93/122 (76%), Positives = 104/122 (85%)
Query: 3 KSDLQHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLDES 62
K + QHW+KDMR STSIKDEEGYPAFALVNKATG+AIKHSLGQSHPVRLVPYNPE +DES
Sbjct: 82 KDEYQHWIKDMRWSTSIKDEEGYPAFALVNKATGQAIKHSLGQSHPVRLVPYNPEVMDES 141
Query: 63 VLWTESKDVGHGFRCVRMVNNIYLNFDAFXXXXXXXXXXXXTTVVLWEWCKGDNQRWKIL 122
VLWTES+DVG+GFRC+RMVNNIYLNFDAF T +VLW+WC+GDNQRWKI
Sbjct: 142 VLWTESRDVGNGFRCIRMVNNIYLNFDAFHGDKYHGGVRDGTDIVLWKWCEGDNQRWKIQ 201
Query: 123 PW 124
P+
Sbjct: 202 PY 203
>Os03g0327600 Ricin B-related lectin domain containing protein
Length = 348
Score = 198 bits (503), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 89/122 (72%), Positives = 100/122 (81%)
Query: 3 KSDLQHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLDES 62
+ + QHW+KDMRHS SIKDEEGYPAFALVN+ TGEAIKHS G+ HPV+LVPYNP Y DES
Sbjct: 227 RDEYQHWIKDMRHSNSIKDEEGYPAFALVNRVTGEAIKHSQGEGHPVKLVPYNPGYQDES 286
Query: 63 VLWTESKDVGHGFRCVRMVNNIYLNFDAFXXXXXXXXXXXXTTVVLWEWCKGDNQRWKIL 122
VLWTES+DVGHGFRC+RMVNNIYLNFDA TTV LW+WC+GDNQRWKI+
Sbjct: 287 VLWTESRDVGHGFRCIRMVNNIYLNFDALHGDKDHGGVRDGTTVALWKWCEGDNQRWKIV 346
Query: 123 PW 124
PW
Sbjct: 347 PW 348
Score = 180 bits (456), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/122 (70%), Positives = 93/122 (76%)
Query: 3 KSDLQHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLDES 62
+ + QHW KDMR S IKDEEG PAFALVNKATG AIKHSLGQ HPV+L P+NPEY DES
Sbjct: 58 RDEHQHWYKDMRFSAKIKDEEGNPAFALVNKATGLAIKHSLGQGHPVKLAPFNPEYPDES 117
Query: 63 VLWTESKDVGHGFRCVRMVNNIYLNFDAFXXXXXXXXXXXXTTVVLWEWCKGDNQRWKIL 122
VLWTES DVG FRC+RM+NNI LNFDAF TT+VLWEW KGDNQ WKIL
Sbjct: 118 VLWTESGDVGKSFRCIRMLNNIRLNFDAFHGDKDHGGVHDGTTIVLWEWAKGDNQCWKIL 177
Query: 123 PW 124
PW
Sbjct: 178 PW 179
>Os01g0104400 Ricin B-related lectin domain containing protein
Length = 268
Score = 197 bits (501), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 89/118 (75%), Positives = 101/118 (85%)
Query: 7 QHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLDESVLWT 66
QHWVKDM++ST +KDEEGYPA ALVNKATG+A+KHS+GQSHPVRLV YNPEY+DESVLWT
Sbjct: 151 QHWVKDMKYSTRVKDEEGYPAMALVNKATGDALKHSIGQSHPVRLVRYNPEYMDESVLWT 210
Query: 67 ESKDVGHGFRCVRMVNNIYLNFDAFXXXXXXXXXXXXTTVVLWEWCKGDNQRWKILPW 124
ES+DVG GFRC+RMVNNIYLNFDA TT+VLWEWC+GDNQRWKI+PW
Sbjct: 211 ESRDVGSGFRCIRMVNNIYLNFDALHGDKDHGGVRDGTTLVLWEWCEGDNQRWKIVPW 268
>Os03g0325900
Length = 341
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 77/118 (65%)
Query: 6 LQHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLDESVLW 65
Q W KD+R+S +KDE G AFALVNKATGEAIKHS G +HPVRLV + P YLDESVLW
Sbjct: 75 FQVWHKDVRYSAGLKDEAGRLAFALVNKATGEAIKHSFGYNHPVRLVKFEPGYLDESVLW 134
Query: 66 TESKDVGHGFRCVRMVNNIYLNFDAFXXXXXXXXXXXXTTVVLWEWCKGDNQRWKILP 123
TES+D G GF + M+NN FDA T ++L+ W GDNQ W++ P
Sbjct: 135 TESEDTGDGFHRIHMINNADYIFDAEEAVPLCDGARDGTRLILFRWNGGDNQLWRMAP 192
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
Query: 3 KSDLQHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLDES 62
K QHW R++ + DEEG+ +F L+N +TG+A+K S + PV LV + P+ +D +
Sbjct: 224 KDPKQHWTVSFRNTGRVTDEEGHRSFLLLNPSTGKAMKRSADKEQPVELVGHGPDSVDVA 283
Query: 63 VLWTESKDVGHGFRCVRMVNNIYLNFDAFXXXXXXXXXXXXTTVVLWEWCKGDNQRWKIL 122
+LWT S +VG GF C+R V+++ L DA T ++++ W G NQRW +L
Sbjct: 284 LLWTRSDNVGEGFHCIRTVSDVSLVLDA-----AGGGRHDGTPIIVFPWNGGANQRWSML 338
Query: 123 P 123
P
Sbjct: 339 P 339
>Os03g0325700 Ricin B-related lectin domain containing protein
Length = 256
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 78/138 (56%), Gaps = 18/138 (13%)
Query: 4 SDLQHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLG------------------Q 45
S L W KD ++S IKDE G PAFALVNKATG+A+KHSLG
Sbjct: 75 SALVVWHKDAKYSAGIKDEAGRPAFALVNKATGDALKHSLGYCCPLKSRFKHEDDVCISP 134
Query: 46 SHPVRLVPYNPEYLDESVLWTESKDVGHGFRCVRMVNNIYLNFDAFXXXXXXXXXXXXTT 105
+H VR++ + P YLDESVLWT S DV G+R + M+NN FDA T
Sbjct: 135 NHLVRVIKFEPGYLDESVLWTASVDVADGYRRIHMMNNADYIFDAEEDTPQYGGARDGTR 194
Query: 106 VVLWEWCKGDNQRWKILP 123
++L+ W +G NQ W+++P
Sbjct: 195 LILFRWNEGLNQIWRMVP 212
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,228,126
Number of extensions: 141233
Number of successful extensions: 350
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 10
Length of query: 124
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 36
Effective length of database: 12,440,969
Effective search space: 447874884
Effective search space used: 447874884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)