Os03g0325900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0325900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 228.15 | 0.71 | 3.07 | -0.468 | 0.0147 | 1.14 | -0.854 | -5.09 | -0.132 | 5.64 | 0.8185 | 131 | -- | -- |
| 236.59 | 0.716 | 3.04 | -0.405 | 0.0253 | 0.466 | 1.27 | -- | -0.158 | 17.1 | 2.094 | 167 | -- | -- |
| 229.75 | 0.706 | 3.07 | -0.479 | 0.0143 | 1.14 | -- | -5.58 | -0.132 | 7.22 | 0.8 | 130 | -- | -- |
| 240.47 | 0.722 | 3.03 | -0.396 | 0.0571 | 0.432 | -- | -- | -0.143 | 16.7 | 2.3 | 167 | -- | -- |
| 229.76 | 0.706 | 3.07 | -0.482 | -- | 1.15 | -- | -5.59 | -0.131 | -- | 0.8 | 130 | -- | -- |
| 239.96 | 0.726 | 3.04 | -0.309 | 0.139 | -- | -1.15 | -- | -0.181 | 5.34 | -- | -- | -- | -- |
| 243.24 | 0.73 | 3.04 | -0.311 | 0.132 | -- | -- | -- | -0.175 | 5.42 | -- | -- | -- | -- |
| 240.57 | 0.722 | 3.04 | -0.391 | -- | 0.377 | -- | -- | -0.157 | -- | 2.3 | 167 | -- | -- |
| 244.41 | 0.728 | 3.03 | -- | 0.00333 | 0.294 | -- | -- | -0.114 | 16.4 | 2.2 | 167 | -- | -- |
| 244.14 | 0.73 | 3.04 | -0.306 | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
| 245.78 | 0.733 | 3.03 | -- | 0.127 | -- | -- | -- | -0.141 | 5.52 | -- | -- | -- | -- |
| 244.41 | 0.728 | 3.03 | -- | -- | 0.291 | -- | -- | -0.114 | -- | 2.2 | 167 | -- | -- |
| 246.62 | 0.733 | 3.03 | -- | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 218.62 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 11 | 218.62 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 21 | 224.46 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 3 | 1 |
| 23 | 225.76 | wind | 7.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 26 | 225.77 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 29 | 227.01 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 1 |
| 57 | 227.01 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 86 | 227.08 | humidity | 90.0 | 10 | > th | dose independent | rect. | 17 | 1 |
| 96 | 227.08 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 106 | 227.48 | radiation | 30.0 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 109 | 227.62 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 110 | 227.85 | wind | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 112 | 228.05 | wind | 1.0 | 90 | < th | dose independent | rect. | 1 | 5 |
| 115 | 228.21 | radiation | 40.0 | 30 | > th | dose independent | rect. | 13 | 1 |
| 117 | 228.25 | radiation | 30.0 | 30 | > th | dose dependent | rect. | 13 | 20 |
| 194 | 229.23 | wind | 1.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 196 | 229.31 | humidity | 90.0 | 90 | > th | dose independent | rect. | 2 | 3 |
| 225 | 229.69 | humidity | 60.0 | 30 | < th | dose dependent | rect. | 13 | 1 |
| 227 | 229.82 | wind | 1.0 | 90 | > th | dose independent | rect. | 4 | 23 |
| 257 | 230.09 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 6 | 2 |
| 258 | 230.10 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 6 | 2 |
| 261 | 230.12 | wind | 3.0 | 90 | < th | dose dependent | rect. | 2 | 4 |
| 290 | 230.31 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 293 | 230.31 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 367 | 230.63 | wind | 1.0 | 90 | < th | dose independent | rect. | 1 | 12 |
| 370 | 230.64 | temperature | 20.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 384 | 230.80 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 1 | 6 |
| 405 | 230.85 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 3 | 4 |
| 410 | 230.90 | temperature | 25.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 418 | 230.96 | wind | 3.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 436 | 231.00 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 439 | 231.02 | humidity | 70.0 | 90 | < th | dose independent | rect. | 12 | 2 |
| 440 | 231.02 | radiation | 30.0 | 30 | > th | dose dependent | sin | 13 | NA |
| 451 | 231.11 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 469 | 231.22 | radiation | 40.0 | 30 | > th | dose independent | sin | 13 | NA |
| 477 | 231.25 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 3 | 4 |
| 479 | 231.27 | wind | 1.0 | 90 | < th | dose independent | rect. | 1 | 17 |
| 502 | 231.29 | humidity | 50.0 | 90 | < th | dose independent | rect. | 11 | 3 |
| 538 | 231.31 | humidity | 50.0 | 90 | < th | dose independent | rect. | 13 | 1 |
| 539 | 231.31 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 555 | 231.34 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 605 | 231.44 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 613 | 231.46 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 616 | 231.47 | wind | 1.0 | 90 | < th | dose independent | sin | 7 | NA |
| 622 | 231.49 | wind | 1.0 | 90 | > th | dose independent | sin | 6 | NA |
| 626 | 231.49 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 707 | 231.56 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 742 | 231.63 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 750 | 231.65 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 4 |
| 751 | 231.65 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 13 | 5 |
| 772 | 231.66 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 19 | 9 |
| 906 | 231.87 | humidity | 50.0 | 10 | < th | dose independent | rect. | 13 | 5 |
| 929 | 231.91 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 930 | 231.91 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 951 | 231.98 | wind | 1.0 | 90 | < th | dose dependent | rect. | 24 | 12 |
| 985 | 232.04 | wind | 1.0 | 90 | < th | dose dependent | rect. | 24 | 15 |