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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0683600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ricin B-related lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0251) R2 : 0.0013
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0406 (0.0528) R2dN8 : 0.00168 R2N8 : 0.0013
σ : 0.472
deviance : 102.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.84 0.46 3.37 0.241 0.114 -0.22 0.404 -0.444 0.125 12.4 1005 1279 -- --
96.33 0.457 3.37 0.243 0.113 -0.238 0.367 -- 0.137 12.4 1005 1434 -- --
96.52 0.458 3.37 0.255 0.112 -0.221 -- -0.39 0.126 11.9 1005 1284 -- --
96.9 0.458 3.37 0.257 0.113 -0.239 -- -- 0.139 11.9 1005 1432 -- --
97.34 0.46 3.38 0.252 -- -0.218 -- -0.39 0.125 -- 1005 1284 -- --
99.19 0.467 3.39 0.246 0.107 -- 0.376 -- 0.069 12.7 -- -- -- --
99.77 0.468 3.39 0.26 0.107 -- -- -- 0.0705 11.9 -- -- -- --
97.7 0.46 3.38 0.254 -- -0.236 -- -- 0.137 -- 1005 1434 -- --
98.62 0.463 3.38 -- 0.108 -0.241 -- -- 0.126 11.9 1005 1634 -- --
100.49 0.468 3.39 0.256 -- -- -- -- 0.0691 -- -- -- -- --
101.55 0.471 3.4 -- 0.104 -- -- -- 0.0416 11.7 -- -- -- --
99.37 0.464 3.38 -- -- -0.241 -- -- 0.119 -- 1005 1629 -- --
102.23 0.472 3.4 -- -- -- -- -- 0.0406 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 90.44 atmosphere 1005.0 90 > th dose dependent rect. 2 1
2 90.66 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 90.68 radiation 1.0 14400 < th dose dependent rect. 3 1
6 91.14 temperature 20.0 30 > th dose dependent rect. 2 1
7 91.17 atmosphere 1005.0 30 > th dose independent rect. 2 1
11 91.19 temperature 20.0 30 > th dose independent rect. 2 1
17 91.23 wind 3.0 30 < th dose independent rect. 2 1
19 91.25 wind 5.0 30 < th dose dependent rect. 2 1
32 91.29 humidity 50.0 30 > th dose dependent rect. 2 1
40 91.30 wind 9.0 1440 < th dose independent rect. 3 1
41 91.30 temperature 10.0 30 > th dose independent rect. 2 1
43 91.30 temperature 10.0 1440 > th dose independent rect. 3 1
46 91.30 temperature 30.0 30 < th dose independent rect. 2 1
47 91.30 temperature 30.0 1440 < th dose independent rect. 3 1
51 91.30 humidity 50.0 30 > th dose independent rect. 2 1
54 91.30 humidity 90.0 30 > th dose independent rect. 2 1
55 91.30 humidity 50.0 1440 > th dose independent rect. 3 1
65 91.30 atmosphere 995.0 1440 > th dose independent rect. 3 1
66 91.30 atmosphere 1010.0 30 < th dose independent rect. 2 1
68 91.30 radiation 1.0 30 < th dose independent rect. 2 1
73 91.30 radiation 1.0 1440 < th dose independent rect. 3 1
93 91.30 precipitation 0.1 30 < th dose independent rect. 2 1
94 91.30 temperature 10.0 30 > th dose independent rect. 3 23
95 91.30 temperature 10.0 1440 > th dose independent rect. 4 23
98 91.30 radiation 1.0 30 < th dose dependent rect. 2 1
108 91.30 precipitation 0.1 30 < th dose dependent rect. 2 1
117 91.50 atmosphere 1015.0 30 < th dose dependent rect. 2 1
118 91.54 temperature 30.0 30 < th dose dependent rect. 2 1
119 91.55 wind 1.0 30 > th dose independent rect. 2 1
139 91.89 precipitation 0.1 30 < th dose independent rect. 3 23
140 91.89 precipitation 0.1 30 < th dose dependent rect. 3 23
190 92.73 wind 9.0 30 < th dose independent rect. 3 23
193 92.78 temperature 25.0 270 > th dose independent rect. 3 6
199 92.90 humidity 50.0 30 > th dose independent rect. 3 23
237 93.41 temperature 25.0 720 > th dose dependent rect. 3 5
239 93.44 temperature 25.0 10 > th dose dependent sin 7 NA
265 93.74 humidity 90.0 90 < th dose independent rect. 2 1
268 93.76 atmosphere 1000.0 720 > th dose independent rect. 3 8
279 93.91 temperature 25.0 90 > th dose dependent rect. 23 12
287 94.01 precipitation 0.1 720 < th dose independent rect. 15 8
290 94.01 precipitation 0.1 720 < th dose dependent rect. 15 8
309 94.23 temperature 25.0 10 > th dose dependent rect. 24 11
317 94.25 wind 9.0 4320 > th dose dependent rect. 3 11
325 94.29 atmosphere 1005.0 720 < th dose independent rect. 22 11
331 94.32 wind 9.0 4320 > th dose independent rect. 3 11
339 94.34 atmosphere 1005.0 270 < th dose independent rect. 4 7
341 94.34 atmosphere 1005.0 720 > th dose independent rect. 23 10
346 94.35 atmosphere 1005.0 720 > th dose independent rect. 21 12
397 94.53 wind 9.0 4320 < th dose independent rect. 2 12
400 94.53 wind 9.0 4320 < th dose independent rect. 23 15
410 94.55 atmosphere 1005.0 720 > th dose independent rect. 23 6
418 94.57 atmosphere 1000.0 30 > th dose independent rect. 11 23
422 94.58 wind 9.0 4320 > th dose dependent rect. 12 2
426 94.59 atmosphere 1000.0 720 > th dose independent rect. 23 16
430 94.60 wind 9.0 4320 > th dose independent rect. 11 3
438 94.62 wind 9.0 4320 < th dose independent rect. 12 2
440 94.62 wind 9.0 4320 > th dose dependent rect. 10 4
442 94.63 atmosphere 1005.0 270 < th dose independent sin 6 NA
444 94.63 precipitation 0.1 720 < th dose independent rect. 11 16
447 94.63 precipitation 0.1 720 < th dose dependent rect. 11 16
451 94.64 temperature 25.0 30 > th dose independent rect. 24 11
466 94.67 humidity 50.0 720 > th dose independent rect. 3 8
478 94.69 atmosphere 1005.0 720 < th dose independent sin 9 NA
486 94.70 atmosphere 1005.0 720 > th dose independent rect. 23 2
501 94.72 atmosphere 1000.0 720 > th dose independent rect. 21 18
525 94.76 temperature 10.0 720 > th dose independent rect. 15 8
529 94.76 temperature 10.0 720 > th dose independent rect. 23 16
535 94.77 wind 9.0 4320 < th dose independent rect. 6 8
538 94.77 temperature 25.0 10 > th dose dependent rect. 4 7
542 94.78 atmosphere 1000.0 270 > th dose independent rect. 22 23
548 94.79 atmosphere 1005.0 720 > th dose independent sin 9 NA
551 94.79 wind 9.0 4320 > th dose dependent sin 5 NA
564 94.81 temperature 25.0 10 > th dose dependent rect. 6 5
569 94.82 wind 9.0 4320 > th dose independent sin 4 NA
572 94.82 atmosphere 1000.0 270 > th dose independent rect. 24 14
575 94.82 temperature 10.0 30 > th dose dependent rect. 3 23
598 94.86 atmosphere 1000.0 10 > th dose independent rect. 2 15
601 94.87 atmosphere 1000.0 720 > th dose independent rect. 3 6
632 94.91 temperature 10.0 720 > th dose independent rect. 3 8
637 94.91 temperature 10.0 720 > th dose independent rect. 11 16
639 94.91 atmosphere 1010.0 270 < th dose dependent rect. 7 1
650 94.93 atmosphere 1005.0 720 > th dose independent rect. 3 2
660 94.94 atmosphere 1005.0 270 > th dose independent sin 6 NA
673 94.94 atmosphere 1005.0 720 < th dose dependent rect. 4 4
674 94.94 atmosphere 1005.0 720 < th dose dependent rect. 23 9
698 94.97 atmosphere 1005.0 90 > th dose independent rect. 3 8
731 95.00 wind 9.0 720 < th dose independent rect. 3 8
738 95.01 temperature 25.0 720 < th dose independent rect. 2 8
739 95.01 atmosphere 995.0 720 > th dose independent rect. 15 8
741 95.01 atmosphere 1000.0 30 > th dose independent rect. 21 23
754 95.03 wind 9.0 4320 < th dose independent sin 4 NA
794 95.06 atmosphere 1005.0 720 < th dose dependent rect. 4 1
801 95.06 atmosphere 995.0 30 > th dose dependent rect. 3 23
813 95.08 atmosphere 1005.0 720 < th dose independent rect. 23 4
853 95.11 atmosphere 1005.0 270 < th dose dependent rect. 4 9
857 95.12 atmosphere 1005.0 720 < th dose independent rect. 5 1
937 95.18 atmosphere 995.0 720 > th dose independent rect. 11 16
972 95.21 temperature 25.0 10 < th dose independent rect. 2 12
980 95.21 atmosphere 1005.0 90 < th dose dependent rect. 6 9
981 95.21 temperature 25.0 30 > th dose dependent rect. 17 20
1000 95.23 atmosphere 1005.0 90 < th dose dependent rect. 6 7