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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0325700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ricin B-related lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.54 (0.0314) R2 : 0.000633
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0356 (0.0662) R2dN8 : 0.000817 R2N8 : 0.000633
σ : 0.592
deviance : 160.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
149.5 0.574 3.54 0.0193 0.138 0.785 -0.849 1.32 0.0465 3.78 24.12 918 -- --
151.54 0.573 3.51 0.232 0.115 0.636 -1.02 -- 0.0953 3.19 24.4 899 -- --
151.38 0.573 3.54 0.00987 0.153 0.792 -- 1.49 0.0398 4.94 24 1005 -- --
154.57 0.579 3.5 0.236 0.154 0.61 -- -- 0.0897 5.32 24.42 1010 -- --
152.51 0.575 3.54 -0.00894 -- 0.776 -- 1.56 0.0417 -- 24 958 -- --
157.48 0.588 3.54 0.0448 0.0689 -- -0.959 -- -0.0354 3.11 -- -- -- --
159.56 0.592 3.53 0.0648 0.15 -- -- -- -0.0308 7.04 -- -- -- --
155.42 0.581 3.51 0.233 -- 0.586 -- -- 0.088 -- 24.4 740 -- --
155.83 0.581 3.52 -- 0.141 0.488 -- -- 0.0466 5.5 24.5 918 -- --
160.75 0.592 3.54 0.0678 -- -- -- -- -0.028 -- -- -- -- --
159.67 0.591 3.53 -- 0.151 -- -- -- -0.038 7.01 -- -- -- --
156.45 0.583 3.52 -- -- 0.485 -- -- 0.051 -- 29.26 505 -- --
160.87 0.592 3.54 -- -- -- -- -- -0.0356 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 133.52 radiation 1.0 43200 < th dose dependent rect. 3 1
8 134.59 atmosphere 1005.0 30 > th dose independent rect. 2 1
13 134.64 wind 3.0 30 < th dose independent rect. 2 1
15 134.65 wind 3.0 30 < th dose dependent rect. 2 1
17 134.66 temperature 25.0 90 > th dose independent rect. 2 1
20 134.67 wind 9.0 1440 < th dose independent rect. 3 1
21 134.67 temperature 10.0 1440 > th dose independent rect. 3 1
24 134.67 temperature 30.0 1440 < th dose independent rect. 3 1
28 134.67 humidity 50.0 1440 > th dose independent rect. 3 1
37 134.67 atmosphere 995.0 1440 > th dose independent rect. 3 1
38 134.67 radiation 1.0 1440 < th dose independent rect. 3 1
58 134.67 temperature 10.0 1440 > th dose independent rect. 4 23
66 134.68 temperature 20.0 30 > th dose dependent rect. 2 1
69 134.71 atmosphere 1005.0 30 > th dose dependent rect. 2 1
84 134.88 temperature 10.0 30 > th dose independent rect. 2 1
86 134.88 temperature 30.0 30 < th dose independent rect. 2 1
87 134.88 humidity 50.0 30 > th dose independent rect. 2 1
91 134.88 atmosphere 1010.0 30 < th dose independent rect. 2 1
93 134.88 radiation 1.0 30 < th dose independent rect. 2 1
98 134.88 precipitation 0.1 30 < th dose independent rect. 2 1
99 134.88 temperature 10.0 30 > th dose independent rect. 3 23
100 134.88 radiation 1.0 30 < th dose dependent rect. 2 1
105 134.88 precipitation 0.1 30 < th dose dependent rect. 2 1
107 134.91 humidity 50.0 30 > th dose dependent rect. 2 1
110 134.94 humidity 90.0 30 > th dose independent rect. 2 1
113 134.95 temperature 25.0 90 > th dose dependent rect. 1 3
114 134.98 wind 9.0 30 < th dose independent rect. 3 23
118 135.05 atmosphere 995.0 30 > th dose independent rect. 3 23
122 135.13 atmosphere 1015.0 30 < th dose dependent rect. 2 1
128 135.25 temperature 30.0 30 < th dose dependent rect. 2 1
138 135.63 wind 1.0 30 > th dose independent rect. 2 1
174 136.39 precipitation 0.1 30 < th dose independent rect. 3 23
175 136.39 precipitation 0.1 30 < th dose dependent rect. 3 23
188 138.78 temperature 10.0 30 > th dose dependent rect. 3 23
197 140.28 humidity 50.0 30 > th dose independent rect. 3 23
206 141.49 wind 1.0 30 < th dose independent rect. 23 4
217 141.88 wind 3.0 10 < th dose dependent rect. 22 5
221 142.10 humidity 50.0 720 > th dose independent rect. 23 16
223 142.25 atmosphere 1015.0 720 < th dose independent rect. 3 8
258 143.37 wind 9.0 720 < th dose independent rect. 3 8
262 143.56 precipitation 0.1 720 < th dose independent rect. 3 8
264 143.56 precipitation 0.1 720 < th dose dependent rect. 3 8
314 144.19 precipitation 0.1 720 < th dose independent rect. 15 8
317 144.19 precipitation 0.1 720 < th dose dependent rect. 15 8
318 144.24 precipitation 0.1 720 < th dose independent rect. 23 16
319 144.24 precipitation 0.1 720 < th dose dependent rect. 23 16
324 144.39 temperature 30.0 30 < th dose independent rect. 3 23
326 144.44 temperature 10.0 720 > th dose independent rect. 3 8
327 144.44 atmosphere 995.0 720 > th dose independent rect. 3 8
328 144.44 temperature 10.0 720 > th dose independent rect. 11 16
329 144.47 humidity 50.0 720 > th dose independent rect. 3 8
343 144.72 temperature 10.0 720 > th dose independent rect. 15 8
344 144.72 temperature 10.0 720 > th dose independent rect. 23 16
360 145.13 wind 3.0 10 < th dose dependent rect. 12 15
363 145.18 atmosphere 995.0 720 > th dose independent rect. 23 16
373 145.41 wind 1.0 30 < th dose independent rect. 8 19
382 145.50 wind 1.0 10 < th dose independent rect. 6 21
387 145.62 humidity 90.0 90 < th dose independent rect. 2 1
388 145.64 precipitation 0.1 720 < th dose independent rect. 11 16
389 145.64 precipitation 0.1 720 < th dose dependent rect. 11 16
390 145.67 atmosphere 995.0 720 > th dose independent rect. 11 16
398 145.81 atmosphere 995.0 720 > th dose independent rect. 15 8
418 146.28 precipitation 0.1 90 > th dose dependent rect. 10 4
421 146.36 precipitation 0.1 90 > th dose independent rect. 10 4
432 146.55 wind 9.0 720 < th dose independent rect. 15 8
447 146.76 atmosphere 1015.0 30 < th dose independent rect. 3 23
471 147.04 humidity 90.0 30 > th dose dependent rect. 11 5
475 147.07 humidity 90.0 30 > th dose dependent rect. 11 3
486 147.20 temperature 15.0 30 > th dose dependent rect. 3 19
492 147.31 radiation 10.0 720 > th dose independent rect. 16 1
497 147.36 wind 9.0 30 < th dose dependent rect. 3 23
531 147.60 atmosphere 1015.0 1440 < th dose independent rect. 3 1
563 147.85 precipitation 0.1 90 > th dose independent rect. 13 1
566 147.85 humidity 90.0 30 > th dose independent rect. 11 5
570 147.85 precipitation 0.1 90 > th dose dependent rect. 13 1
574 147.88 humidity 90.0 30 > th dose independent rect. 11 3
579 147.89 humidity 90.0 30 > th dose independent rect. 13 3
587 147.92 humidity 90.0 30 > th dose dependent rect. 13 3
591 147.93 humidity 90.0 30 > th dose independent rect. 13 1
610 147.93 temperature 20.0 720 > th dose dependent rect. 3 3
618 147.96 humidity 90.0 30 > th dose dependent rect. 13 1
619 147.96 radiation 1.0 720 > th dose dependent rect. 16 1
685 148.13 radiation 1.0 720 > th dose dependent rect. 16 13
687 148.14 wind 9.0 720 < th dose independent rect. 23 16
708 148.18 humidity 90.0 90 < th dose independent rect. 1 4
729 148.27 temperature 10.0 720 > th dose dependent rect. 3 8
771 148.41 temperature 10.0 720 > th dose dependent rect. 3 3
783 148.46 humidity 60.0 1440 < th dose dependent rect. 17 1
784 148.46 temperature 25.0 720 < th dose dependent rect. 2 6
809 148.63 temperature 25.0 720 < th dose dependent rect. 22 12
812 148.64 temperature 25.0 720 < th dose dependent rect. 22 14
815 148.65 humidity 60.0 1440 < th dose dependent rect. 17 16
817 148.66 temperature 25.0 720 < th dose dependent sin 7 NA
936 148.82 temperature 25.0 720 < th dose dependent rect. 5 2
955 148.88 temperature 20.0 720 > th dose independent rect. 3 12
961 148.89 temperature 25.0 720 > th dose independent rect. 15 12
965 148.90 temperature 10.0 720 > th dose dependent rect. 3 12