BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0325700 Os03g0325700|Os03g0325700
         (256 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39050.1  | chr2:16303427-16305336 FORWARD LENGTH=318          127   6e-30

>AT2G39050.1 | chr2:16303427-16305336 FORWARD LENGTH=318
          Length = 317

 Score =  127 bits (319), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 99/207 (47%), Gaps = 60/207 (28%)

Query: 6   RIQCRASDVLRLTIVNGEVILGKSDPRDDRQARPLHFPSASXXXXXXXXXXXXXXCTLRQ 65
           ++  +A     LTI +G+VIL  +DP D+ Q                             
Sbjct: 170 KVYSKAEPNYNLTIRDGKVILAPADPSDEAQH---------------------------- 201

Query: 66  YGQQYPKIISALVVWHKDAKYSAGIKDEAGRPAFALVNKATGDALKHSLGYCCPLKSRFK 125
                         W+KD KYS  +KD  G P FALVNKATG+A+KHS+G   P+     
Sbjct: 202 --------------WYKDEKYSTKVKDADGHPCFALVNKATGEAMKHSVGATHPV----- 242

Query: 126 HEDDVCISPNHLVRVIKFEPGYLDESVLWTASVDVADGYRRIHMMNNADYIFDAEEDTPQ 185
                     HL+R +   P  LDESVLWT S D  DGYR I M+NN     DA     +
Sbjct: 243 ----------HLIRYV---PDKLDESVLWTESKDFGDGYRTIRMVNNTRLNVDAYHGDSK 289

Query: 186 YGGARDGTRLILFRWNEGLNQIWRMVP 212
            GG RDGT ++L+ WN+G NQ+W++ P
Sbjct: 290 SGGVRDGTTIVLWDWNKGDNQLWKIFP 316



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,620,588
Number of extensions: 230488
Number of successful extensions: 338
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 160
Effective length of database: 8,474,633
Effective search space: 1355941280
Effective search space used: 1355941280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)