Os07g0684000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ricin B-related lectin domain containing protein.
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Os07g0684000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ricin B-related lectin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.86 | 0.512 | 14.8 | 1.13 | 0.881 | -0.46 | -0.194 | 4.77 | 0.0681 | 16.8 | 1.17 | 1429 | -- | -- |
| 147.79 | 0.566 | 14.8 | 1.63 | 0.886 | -0.705 | -0.334 | -- | 0.0773 | 16.5 | 0.17 | 5642 | -- | -- |
| 118.96 | 0.508 | 14.8 | 1.13 | 0.881 | -0.457 | -- | 4.8 | 0.0679 | 16.8 | 1.17 | 1428 | -- | -- |
| 134.97 | 0.541 | 14.7 | 1.73 | 0.77 | -0.963 | -- | -- | 0.233 | 16.4 | 0.3483 | 1435 | -- | -- |
| 159.41 | 0.588 | 14.8 | 1.11 | -- | -0.453 | -- | 5.04 | 0.0634 | -- | 1.17 | 1452 | -- | -- |
| 154.05 | 0.582 | 14.7 | 1.99 | 0.897 | -- | -0.203 | -- | 0.328 | 16.8 | -- | -- | -- | -- |
| 154.16 | 0.581 | 14.7 | 1.99 | 0.896 | -- | -- | -- | 0.327 | 16.8 | -- | -- | -- | -- |
| 142.34 | 0.556 | 14.7 | 1.9 | -- | -1.12 | -- | -- | 0.293 | -- | 0.5105 | 633 | -- | -- |
| 202.14 | 0.662 | 14.8 | -- | 0.978 | -1.21 | -- | -- | 0.169 | 16.7 | 0.009999 | 47520 | -- | -- |
| 196.66 | 0.655 | 14.7 | 1.96 | -- | -- | -- | -- | 0.304 | -- | -- | -- | -- | -- |
| 258.83 | 0.753 | 14.8 | -- | 0.86 | -- | -- | -- | 0.105 | 16.8 | -- | -- | -- | -- |
| 238.61 | 0.719 | 14.7 | -- | -- | -1.03 | -- | -- | 0.234 | -- | 9.994e-07 | 649 | -- | -- |
| 297.91 | 0.806 | 14.8 | -- | -- | -- | -- | -- | 0.0868 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.91 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 2 | 117.08 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 3 | 117.31 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 5 | 117.63 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 6 | 117.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 10 | 117.99 | humidity | 80 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 11 | 118.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 14 | 118.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 15 | 118.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 16 | 118.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 18 | 118.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 12 |
| 23 | 118.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 18 |
| 41 | 118.58 | radiation | 1 | 1440 | < th | dose dependent | sin | 1 | NA |
| 50 | 119.04 | radiation | 1 | 1440 | > th | dose independent | sin | 0 | NA |
| 52 | 119.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 16 |
| 54 | 119.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 19 |
| 73 | 119.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 22 |
| 79 | 119.14 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 99 | 119.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 14 |
| 109 | 119.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 127 | 119.36 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 173 | 119.36 | humidity | 80 | 1440 | > th | dose dependent | rect. | 8 | 9 |
| 185 | 119.40 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 187 | 119.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 188 | 119.44 | radiation | 1 | 1440 | < th | dose independent | sin | 0 | NA |
| 203 | 119.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 207 | 119.62 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 11 |
| 213 | 119.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 218 | 119.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 219 | 119.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 20 |
| 231 | 119.79 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 233 | 119.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 20 |
| 234 | 119.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 264 | 119.85 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 300 | 119.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 310 | 120.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 335 | 120.24 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 344 | 120.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 351 | 120.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 352 | 120.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 366 | 120.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 373 | 120.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 425 | 120.64 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 427 | 120.67 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 490 | 121.01 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 12 |
| 527 | 121.30 | humidity | 80 | 720 | > th | dose dependent | sin | 0 | NA |
| 540 | 121.41 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 575 | 121.60 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 15 |
| 608 | 121.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 609 | 121.78 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 620 | 121.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 663 | 122.11 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 691 | 122.28 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 696 | 122.30 | humidity | 70 | 1440 | > th | dose dependent | rect. | 2 | 14 |
| 708 | 122.35 | humidity | 70 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 743 | 122.71 | radiation | 1 | 1440 | > th | dose independent | sin | 14 | NA |
| 821 | 123.21 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 15 |
| 900 | 123.58 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 901 | 123.59 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 911 | 123.63 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 922 | 123.68 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 931 | 123.76 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 934 | 123.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 967 | 123.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 2 |