BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0637200 Os07g0637200|AK072575
(652 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0637200 Protein of unknown function DUF537 family protein 1237 0.0
Os03g0370200 Protein of unknown function DUF537 family protein 175 1e-43
Os11g0167300 Protein of unknown function DUF537 family protein 141 2e-33
Os08g0230500 Protein of unknown function DUF537 family protein 125 1e-28
Os12g0162900 Protein of unknown function DUF537 family protein 74 3e-13
>Os07g0637200 Protein of unknown function DUF537 family protein
Length = 652
Score = 1237 bits (3201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/652 (93%), Positives = 607/652 (93%)
Query: 1 MAEYATAKTSVWWDIENCQVPRACDPNLIAQNMSSALAAAGYTGPVSISAYGDIGRIGNA 60
MAEYATAKTSVWWDIENCQVPRACDPNLIAQNMSSALAAAGYTGPVSISAYGDIGRIGNA
Sbjct: 1 MAEYATAKTSVWWDIENCQVPRACDPNLIAQNMSSALAAAGYTGPVSISAYGDIGRIGNA 60
Query: 61 VTHALSSTGISLNHVPAGIKDASDKKILVDMLFWAIDNPPPANYLLISGDRDFSNALHKL 120
VTHALSSTGISLNHVPAGIKDASDKKILVDMLFWAIDNPPPANYLLISGDRDFSNALHKL
Sbjct: 61 VTHALSSTGISLNHVPAGIKDASDKKILVDMLFWAIDNPPPANYLLISGDRDFSNALHKL 120
Query: 121 TMRRYNILLAQPPNVSQALTAAAKSVWLWKSLVAGEPPLAESPYVSSTASGNMVELXXXX 180
TMRRYNILLAQPPNVSQALTAAAKSVWLWKSLVAGEPPLAESPYVSSTASGNMVEL
Sbjct: 121 TMRRYNILLAQPPNVSQALTAAAKSVWLWKSLVAGEPPLAESPYVSSTASGNMVELDKSK 180
Query: 181 XXXXXXXXXXXXXXPQNGLQSDHQKGGNGKADKQSKVKQPRRNQSDNVSKPASNEENSVE 240
PQNGLQSDHQKGGNGKADKQSKVKQPRRNQSDNVSKPASNEENSVE
Sbjct: 181 NINSDSSDTTTDTNPQNGLQSDHQKGGNGKADKQSKVKQPRRNQSDNVSKPASNEENSVE 240
Query: 241 VADNSKEYTTDHPTQXXXXXXXXXXXXXXQDGAKVNQSSKPKVQPFSLPKKPAKSAHCHQ 300
VADNSKEYTTDHPTQ QDGAKVNQSSKPKVQPFSLPKKPAKSAHCHQ
Sbjct: 241 VADNSKEYTTDHPTQSSMPSSSSSSSSESQDGAKVNQSSKPKVQPFSLPKKPAKSAHCHQ 300
Query: 301 KTAPHDFNXXXXXXXXXXXXXNGTPDSGNGGGYNPKHHKPHTSQSPRPQNSITHPHSGSE 360
KTAPHDFN NGTPDSGNGGGYNPKHHKPHTSQSPRPQNSITHPHSGSE
Sbjct: 301 KTAPHDFNSKKSGASAESAAKNGTPDSGNGGGYNPKHHKPHTSQSPRPQNSITHPHSGSE 360
Query: 361 IFHHTLSSQRTNSCSPSAGHNGAPTAPLQSWPSAPPYHSPPVNYPDLNRINISGYPRGIH 420
IFHHTLSSQRTNSCSPSAGHNGAPTAPLQSWPSAPPYHSPPVNYPDLNRINISGYPRGIH
Sbjct: 361 IFHHTLSSQRTNSCSPSAGHNGAPTAPLQSWPSAPPYHSPPVNYPDLNRINISGYPRGIH 420
Query: 421 DNQGVNMNYHPNHSGSPHNVQPAYNSYRPPTPPSMPSNMQNAGQWGVNPGYPQPSSDPQG 480
DNQGVNMNYHPNHSGSPHNVQPAYNSYRPPTPPSMPSNMQNAGQWGVNPGYPQPSSDPQG
Sbjct: 421 DNQGVNMNYHPNHSGSPHNVQPAYNSYRPPTPPSMPSNMQNAGQWGVNPGYPQPSSDPQG 480
Query: 481 LIRNILGALEVLKTEKIPPIEQHISDCIRYGEANLPNFDVKKALELAIQHQAIVLKMLGP 540
LIRNILGALEVLKTEKIPPIEQHISDCIRYGEANLPNFDVKKALELAIQHQAIVLKMLGP
Sbjct: 481 LIRNILGALEVLKTEKIPPIEQHISDCIRYGEANLPNFDVKKALELAIQHQAIVLKMLGP 540
Query: 541 MSFYLGKNQNLWKCVNIMDINAKYPKDTFDAVHRFISSTSGSSAIKNSRSKYQAAIVLKN 600
MSFYLGKNQNLWKCVNIMDINAKYPKDTFDAVHRFISSTSGSSAIKNSRSKYQAAIVLKN
Sbjct: 541 MSFYLGKNQNLWKCVNIMDINAKYPKDTFDAVHRFISSTSGSSAIKNSRSKYQAAIVLKN 600
Query: 601 QCLKHLALGEVLQILYIIINTKKWFVPHSSGWQPLSFNIIVVDATTGAGGKA 652
QCLKHLALGEVLQILYIIINTKKWFVPHSSGWQPLSFNIIVVDATTGAGGKA
Sbjct: 601 QCLKHLALGEVLQILYIIINTKKWFVPHSSGWQPLSFNIIVVDATTGAGGKA 652
>Os03g0370200 Protein of unknown function DUF537 family protein
Length = 180
Score = 175 bits (443), Expect = 1e-43, Method: Composition-based stats.
Identities = 94/137 (68%), Positives = 107/137 (78%), Gaps = 1/137 (0%)
Query: 8 KTSVWWDIENCQVPRAC-DPNLIAQNMSSALAAAGYTGPVSISAYGDIGRIGNAVTHALS 66
KTSVWWDI+ C VP C DP+ +A + +ALAAAG GPVSI AYGD R+ V ALS
Sbjct: 12 KTSVWWDIDRCGVPPCCRDPHRVAHGVIAALAAAGCAGPVSIFAYGDAARVAPPVLAALS 71
Query: 67 STGISLNHVPAGIKDASDKKILVDMLFWAIDNPPPANYLLISGDRDFSNALHKLTMRRYN 126
STGISLNHVPAG KD +DKK+LVDMLFWA DNPPP NYLLISGD+DFS+ LH+L M+RY
Sbjct: 72 STGISLNHVPAGAKDGTDKKMLVDMLFWAFDNPPPGNYLLISGDQDFSDLLHRLRMKRYG 131
Query: 127 ILLAQPPNVSQALTAAA 143
ILLAQP NVS + AAA
Sbjct: 132 ILLAQPSNVSSRVLAAA 148
>Os11g0167300 Protein of unknown function DUF537 family protein
Length = 925
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 94/149 (63%)
Query: 7 AKTSVWWDIENCQVPRACDPNLIAQNMSSALAAAGYTGPVSISAYGDIGRIGNAVTHALS 66
K SVWWD ++C +P+ +P +A +++AL AG GPV I+A GD + AV AL+
Sbjct: 57 VKVSVWWDFQSCHLPQGANPCRVATRVTAALRDAGIRGPVDITALGDAYMLPRAVQEALA 116
Query: 67 STGISLNHVPAGIKDASDKKILVDMLFWAIDNPPPANYLLISGDRDFSNALHKLTMRRYN 126
+TG++ +HVP+ K D+ + D+ +W NPPPA++ LISG++ +N LH+L M YN
Sbjct: 117 ATGVAFSHVPSSGKGGPDQLFMADLTYWIAQNPPPAHFFLISGNKGLANILHRLRMSNYN 176
Query: 127 ILLAQPPNVSQALTAAAKSVWLWKSLVAG 155
+LLA P S L +AA +W W +LV G
Sbjct: 177 VLLACPSADSSVLCSAATIMWPWDALVKG 205
>Os08g0230500 Protein of unknown function DUF537 family protein
Length = 530
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 9 TSVWWDIENCQVPRACDPNLIAQNMSSALAAAGYT-GPVS-ISAYGDIGRIGNAVTHALS 66
+++WDIENC VP P +A N+ AL G V+ +SAYGD +
Sbjct: 52 VAIFWDIENCPVPSDVRPEDVAGNVRMALRLHPVVKGAVTMLSAYGDFNAFPRRLREGCQ 111
Query: 67 STGISLNHVPAGIKDASDKKILVDMLFWAIDNPPPANYLLISGDRDFSNALHKLTMRRYN 126
TG+ L VP G KDA+DK ILVDM +A+DN PP++ +LISGD DF+ ALH L R Y
Sbjct: 112 RTGVKLVDVPNGRKDAADKAILVDMFLFALDNRPPSSIMLISGDVDFAPALHILGQRGYT 171
Query: 127 ILLAQPPN--VSQALTAAAKSVWLWKSLVAGEPPLA 160
I+LA P + VS AL++A VW W SL GE +A
Sbjct: 172 IVLAIPSSVTVSSALSSAGSFVWDWPSLARGEGIVA 207
>Os12g0162900 Protein of unknown function DUF537 family protein
Length = 141
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 7 AKTSVWWDIENCQVPRACDPNLIAQNMSSALAAAGYTGPVSISAYGDIGRIGNAVTHALS 66
K SVWWD ENC +P +P +A +++AL AAG GP+SI+A+GD+ ++ L
Sbjct: 53 VKVSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRGPLSITAFGDVVQLARPSQEDLV 112
Query: 67 STGISLNHVP 76
+TG+S++HVP
Sbjct: 113 ATGVSISHVP 122
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.129 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,489,686
Number of extensions: 1099232
Number of successful extensions: 3428
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3424
Number of HSP's successfully gapped: 5
Length of query: 652
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 545
Effective length of database: 11,448,903
Effective search space: 6239652135
Effective search space used: 6239652135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)