Os12g0162900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF537 family protein.
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Os12g0162900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF537 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.23 | 0.556 | 6.5 | 1.38 | 2.94 | -1.89 | 1.1 | -1.6 | 0.237 | 15.6 | 13.91 | 240 | 2.92 | 10.4 |
| 144.49 | 0.56 | 6.5 | 1.42 | 2.93 | -1.86 | 1.23 | -- | 0.248 | 15.7 | 13.47 | 238 | 2.93 | 10.4 |
| 143.63 | 0.558 | 6.5 | 1.4 | 2.93 | -1.89 | -- | -1.86 | 0.251 | 15.7 | 13.47 | 239 | 2.88 | 10.3 |
| 150.49 | 0.571 | 6.5 | 1.44 | 2.93 | -1.88 | -- | -- | 0.242 | 15.6 | 14.21 | 239 | 2.82 | 10.5 |
| 327.37 | 0.843 | 6.44 | 1.43 | -- | -2.8 | -- | -1.76 | 0.439 | -- | 62.52 | 170 | 0.0165 | 8.27 |
| 196.97 | 0.658 | 6.54 | 1.46 | 3.77 | -- | 1.87 | -- | 0.222 | 16.6 | -- | -- | -- | -- |
| 206.3 | 0.673 | 6.53 | 1.48 | 3.78 | -- | -- | -- | 0.232 | 16.6 | -- | -- | -- | -- |
| 333.72 | 0.851 | 6.44 | 1.55 | -- | -2.86 | -- | -- | 0.409 | -- | 48.04 | 174 | 0.00991 | 8.22 |
| 204.41 | 0.666 | 6.53 | -- | 2.94 | -1.86 | -- | -- | 0.0808 | 15.6 | 16.6 | 230 | 2.92 | 10.8 |
| 967.69 | 1.45 | 6.5 | 1.33 | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
| 263.65 | 0.76 | 6.57 | -- | 3.75 | -- | -- | -- | 0.068 | 16.6 | -- | -- | -- | -- |
| 395.95 | 0.927 | 6.48 | -- | -- | -2.77 | -- | -- | 0.264 | -- | 49.39 | 171 | 0.0167 | 8.33 |
| 1014.28 | 1.49 | 6.54 | -- | -- | -- | -- | -- | -0.0145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.37 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 2 | 142.43 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 8 | 143.59 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 12 | 143.85 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 14 | 144.06 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 22 | 144.37 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 63 | 146.54 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 70 | 146.75 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 99 | 147.51 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 103 | 147.79 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 113 | 148.05 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 121 | 148.16 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 122 | 148.31 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 125 | 148.34 | radiation | 10.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 128 | 148.47 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 132 | 148.62 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 134 | 148.62 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 147 | 148.98 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 156 | 149.16 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 157 | 149.16 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 171 | 149.46 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 177 | 149.60 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 179 | 149.60 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 180 | 149.60 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 183 | 149.60 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 188 | 149.60 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 195 | 149.75 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 20 |
| 197 | 149.80 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 198 | 149.82 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 206 | 149.92 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 211 | 150.06 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 19 |
| 212 | 150.06 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 217 | 150.10 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 221 | 150.27 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 18 |
| 232 | 150.58 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 237 | 150.63 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 18 |
| 238 | 150.64 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 262 | 150.97 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 276 | 151.24 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 286 | 151.38 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 19 |
| 288 | 151.42 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 5 |
| 289 | 151.42 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 291 | 151.44 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 294 | 151.51 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 318 | 151.78 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 17 |
| 336 | 151.96 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 345 | 152.06 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 347 | 152.06 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 348 | 152.06 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 350 | 152.06 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 351 | 152.06 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 352 | 152.06 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 353 | 152.07 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 360 | 152.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 362 | 152.14 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 363 | 152.14 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 366 | 152.14 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 367 | 152.14 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 369 | 152.14 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 372 | 152.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 378 | 152.17 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 441 | 152.44 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 444 | 152.46 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 8 |
| 498 | 153.00 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 18 |
| 504 | 153.18 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 777 | 155.11 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 822 | 155.34 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 823 | 155.34 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 826 | 155.34 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 828 | 155.34 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 829 | 155.34 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 831 | 155.34 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 842 | 155.36 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 847 | 155.38 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 4 | 11 |
| 867 | 155.49 | radiation | 10.0 | 270 | > th | dose independent | sin | 4 | NA |
| 889 | 155.66 | radiation | 10.0 | 270 | < th | dose independent | rect. | 13 | 19 |
| 892 | 155.67 | radiation | 10.0 | 270 | > th | dose independent | rect. | 16 | 22 |
| 905 | 155.77 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 21 |
| 949 | 155.95 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 14 |
| 966 | 156.01 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |