BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0162900 Os12g0162900|J090073L16
(141 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G64710.1 | chr5:25869368-25872092 FORWARD LENGTH=842 101 1e-22
AT5G09840.1 | chr5:3059027-3061970 FORWARD LENGTH=925 100 2e-22
AT5G61180.1 | chr5:24612867-24614174 FORWARD LENGTH=347 71 1e-13
AT3G62200.1 | chr3:23023437-23025671 REVERSE LENGTH=674 71 2e-13
AT5G61190.1 | chr5:24615480-24619886 FORWARD LENGTH=996 64 2e-11
AT3G60940.1 | chr3:22521615-22523029 REVERSE LENGTH=258 64 2e-11
AT3G62210.1 | chr3:23026910-23028113 REVERSE LENGTH=280 63 5e-11
AT3G61028.2 | chr3:22581506-22584209 REVERSE LENGTH=255 61 2e-10
AT3G62850.1 | chr3:23237487-23239155 REVERSE LENGTH=473 56 7e-09
AT5G35640.1 | chr5:13834633-13835606 FORWARD LENGTH=193 55 1e-08
AT3G62050.1 | chr3:22978305-22978944 FORWARD LENGTH=158 54 2e-08
AT4G20480.1 | chr4:11034465-11035526 REVERSE LENGTH=262 47 2e-06
AT5G39640.1 | chr5:15873039-15873269 REVERSE LENGTH=77 47 3e-06
>AT5G64710.1 | chr5:25869368-25872092 FORWARD LENGTH=842
Length = 841
Score = 101 bits (252), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/83 (53%), Positives = 66/83 (79%), Gaps = 4/83 (4%)
Query: 50 SKAVKVSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRGPLSITAFGDVVQLARPSQE 109
S++V+V VWWDFENC+LP+G N ++A +T+A+R GI+GP++ITA+GD++QL+R +QE
Sbjct: 57 SRSVRVPVWWDFENCHLPSGANVFKLAQTITSAVRICGIKGPITITAYGDMIQLSRTNQE 116
Query: 110 DLVATGVSISHVP----NSCVRS 128
L ATG++++HVP NS RS
Sbjct: 117 ALFATGINLTHVPQGGKNSTDRS 139
>AT5G09840.1 | chr5:3059027-3061970 FORWARD LENGTH=925
Length = 924
Score = 100 bits (250), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/74 (59%), Positives = 61/74 (82%)
Query: 50 SKAVKVSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRGPLSITAFGDVVQLARPSQE 109
S++V+VSVWWDF +CNLP N +VA +TAA+R +GI+GP++ITAFGDV+QL R +Q+
Sbjct: 68 SRSVRVSVWWDFLSCNLPVDTNVYKVAQSITAAIRNSGIKGPITITAFGDVLQLPRSNQD 127
Query: 110 DLVATGVSISHVPN 123
L ATG+S++HVPN
Sbjct: 128 ALSATGISLTHVPN 141
>AT5G61180.1 | chr5:24612867-24614174 FORWARD LENGTH=347
Length = 346
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 54 KVSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRGPLSITAFGDVVQLARPSQEDLVA 113
K SVWWD ENC +P G +P VA + + L + GPL+I A+GD Q+ Q+ L +
Sbjct: 81 KTSVWWDIENCEVPKGCDPHGVAQSIRSVLSKSNFCGPLTIYAYGDTNQIPSSVQQALSS 140
Query: 114 TGVSISHVP 122
TGVS++HVP
Sbjct: 141 TGVSLNHVP 149
>AT3G62200.1 | chr3:23023437-23025671 REVERSE LENGTH=674
Length = 673
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 47/70 (67%)
Query: 53 VKVSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRGPLSITAFGDVVQLARPSQEDLV 112
K SVWWD ENC +PNG++ +A +T+AL+ GP+SI+A+GD ++ Q L
Sbjct: 28 AKTSVWWDIENCQVPNGLDAHGIAQNITSALQKMNYCGPVSISAYGDTNRIPLTIQHALN 87
Query: 113 ATGVSISHVP 122
+TG++++HVP
Sbjct: 88 STGIALNHVP 97
>AT5G61190.1 | chr5:24615480-24619886 FORWARD LENGTH=996
Length = 995
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 54 KVSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRGPLSITAFGDVVQLARPSQEDLVA 113
K SVWWD ENC +P G + +A V+++L GP+SI+A+GD + Q+ L +
Sbjct: 12 KTSVWWDIENCEVPRGWDAHVIALNVSSSLLKMNYCGPVSISAYGDTNLIPLHHQQALSS 71
Query: 114 TGVSISHVP 122
TGV+++H+P
Sbjct: 72 TGVALNHIP 80
>AT3G60940.1 | chr3:22521615-22523029 REVERSE LENGTH=258
Length = 257
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 54 KVSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRGPLSITAFGDVVQLARPSQEDLVA 113
K VWWD EN +P G + R+ + AL G RGP+SI AFG++ + P Q L +
Sbjct: 82 KTQVWWDTENSPVPRGFDAYRIGGNIRNALNENGYRGPISIRAFGNMRLIPTPIQLALTS 141
Query: 114 TGVSISHVPNSCVRS 128
TG+ + HVP + V S
Sbjct: 142 TGIDLYHVPGNKVGS 156
>AT3G62210.1 | chr3:23026910-23028113 REVERSE LENGTH=280
Length = 279
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 54 KVSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRGPLSITAFGDVVQLARPSQEDLVA 113
K SVWWD ENC +P G++ +A +++AL+ G +SI+A+GD + Q L +
Sbjct: 23 KTSVWWDIENCQVPKGLDAHGIAQNISSALKKMNYCGRVSISAYGDTSGIPHVIQHALNS 82
Query: 114 TGVSISHVP 122
TG+ + HVP
Sbjct: 83 TGIELHHVP 91
>AT3G61028.2 | chr3:22581506-22584209 REVERSE LENGTH=255
Length = 254
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 52 AVKVSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRGPL-SITAFGDVVQLARPSQED 110
K +WWD ++C LP+ V+P R+ + +L G RGP+ SI AFG+ ++ +
Sbjct: 79 TAKTEIWWDVDSCRLPDSVDPYRLVGNLRKSLNEKGYRGPITSINAFGNTNRIDETTMLA 138
Query: 111 LVATGVSISHVPN 123
L ATGV H+P+
Sbjct: 139 LSATGVYTRHIPD 151
>AT3G62850.1 | chr3:23237487-23239155 REVERSE LENGTH=473
Length = 472
Score = 55.8 bits (133), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 54 KVSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRGPLSITAFGDVVQLARPSQ--EDL 111
K++VWWD ++C +P G + V P + AA G GP+SIT +GD Q P Q L
Sbjct: 15 KIAVWWDMKDCPIPEGYDARLVRPSIEAAFNELGYSGPISITGYGD--QRETPCQILRGL 72
Query: 112 VATGVSISHV 121
+TGV+++ +
Sbjct: 73 SSTGVAVAQI 82
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 55 VSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRGPLSITAFGDVVQLARPSQEDLVAT 114
+ VWWD ++C +P G + +V P + A + G GP+SIT GD + +L +T
Sbjct: 240 IVVWWDMKDCPIPEGYDARQVRPSLEGAFKKLGYSGPVSITGCGDHNKTPDHILRELSST 299
Query: 115 GVSISHVPNSCVRS 128
GV ++H + + S
Sbjct: 300 GVDLAHSIDEVIYS 313
>AT5G35640.1 | chr5:13834633-13835606 FORWARD LENGTH=193
Length = 192
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 52 AVKVSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRGPLSITAFGDVVQLARPSQEDL 111
A SVWWD C LPN V+ RV+P + AL G G L+ TA G + + +
Sbjct: 31 AAATSVWWDINRCPLPNDVDVRRVSPFIKRALEKLGYTGALTTTAIGILTDVPHDFLTQV 90
Query: 112 VATGVSISHVP 122
++G++I H+P
Sbjct: 91 YSSGIAIHHIP 101
>AT3G62050.1 | chr3:22978305-22978944 FORWARD LENGTH=158
Length = 157
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 52 AVKVSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRGPLSITAFGDVVQLARPSQEDL 111
A + ++WD E+C +P+ +N G + +AL + G G +S+ A+GD L PS+
Sbjct: 11 AAETGIFWDIEDCKIPDDLNAGDALKNIKSALSSDGHHGTVSVRAYGDTTGLDFPSE--- 67
Query: 112 VATGVSISHVP 122
G+ ++H P
Sbjct: 68 ---GIKLNHFP 75
>AT4G20480.1 | chr4:11034465-11035526 REVERSE LENGTH=262
Length = 261
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 55 VSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRGPLSITAFGDVVQLARPSQEDLVAT 114
VSV+WD ++ +P+G + V P + LR G GP++ITA G + ++ R + + +T
Sbjct: 18 VSVFWDIKSFPVPDGYDARLVGPCIKRNLRKLGYTGPITITAVGVLSEVPRDILKAVYST 77
Query: 115 GVSISHVPNS 124
G+S+ V S
Sbjct: 78 GISLKEVIKS 87
>AT5G39640.1 | chr5:15873039-15873269 REVERSE LENGTH=77
Length = 76
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 54 KVSVWWDFENCNLPNGVNPGRVAPRVTAALRAAGIRGPLSITAFG 98
K VWWD +C +P+G + VA + + L+ AG GPL+ITA G
Sbjct: 23 KTMVWWDINSCPVPDGYDARMVAHSIESELKKAGYPGPLTITAIG 67
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,445,493
Number of extensions: 71360
Number of successful extensions: 193
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 14
Length of query: 141
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 52
Effective length of database: 8,666,545
Effective search space: 450660340
Effective search space used: 450660340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)