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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0370200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF537 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0389) R2 : 0.000203
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.025 (0.082) R2dN8 : 0.000262 R2N8 : 0.000203
σ : 0.733
deviance : 246.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
234.22 0.719 3.21 -0.0883 0.272 1.98 0.143 -4.4 0.0947 5.22 0.3728 1381 -- --
237.12 0.717 3.14 0.0952 0.333 1.05 0.125 -- 0.0651 4.75 0.9999 1087 -- --
234.25 0.713 3.21 -0.0886 0.273 1.97 -- -4.38 0.0944 5.01 0.3757 1381 -- --
236.29 0.716 3.17 0.0504 0.251 0.912 -- -- 0.0615 4.59 0.6496 1092 -- --
238.18 0.719 3.22 -0.0782 -- 1.98 -- -4.42 0.101 -- 0.3894 1381 -- --
242.26 0.73 3.17 0.157 0.27 -- 0.0839 -- 0.0369 5.05 -- -- -- --
242.28 0.729 3.17 0.156 0.27 -- -- -- 0.0365 4.91 -- -- -- --
239.68 0.721 3.17 0.0538 -- 0.947 -- -- 0.0648 -- 0.724 1082 -- --
236.27 0.716 3.17 -- 0.258 0.941 -- -- 0.0532 5.1 0.6989 1092 -- --
246.12 0.733 3.17 0.166 -- -- -- -- 0.0434 -- -- -- -- --
242.92 0.729 3.17 -- 0.273 -- -- -- 0.019 4.89 -- -- -- --
239.75 0.721 3.17 -- -- 0.97 -- -- 0.0599 -- 0.6958 1088 -- --
246.85 0.733 3.18 -- -- -- -- -- 0.025 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 225.23 temperature 30.0 90 > th dose dependent rect. 10 1
2 229.13 temperature 30.0 90 > th dose independent rect. 10 1
18 232.81 temperature 30.0 270 > th dose independent rect. 8 3
48 233.88 precipitation 0.1 1440 < th dose independent sin 1 NA
49 233.88 precipitation 0.1 1440 < th dose dependent sin 1 NA
50 233.90 precipitation 0.1 1440 < th dose independent rect. 4 14
51 233.90 precipitation 0.1 1440 < th dose dependent rect. 4 14
52 233.96 precipitation 0.1 1440 < th dose independent rect. 1 17
53 233.96 precipitation 0.1 1440 < th dose dependent rect. 1 17
60 234.03 precipitation 0.1 1440 > th dose independent sin 1 NA
61 234.03 precipitation 0.1 1440 > th dose dependent sin 2 NA
65 234.06 precipitation 0.1 1440 > th dose independent rect. 23 19
68 234.07 precipitation 0.1 1440 > th dose independent rect. 4 15
93 234.11 wind 1.0 90 > th dose dependent rect. 4 1
106 234.21 precipitation 0.1 4320 < th dose independent rect. 19 1
107 234.21 precipitation 0.1 4320 < th dose dependent rect. 19 1
108 234.22 atmosphere 1000.0 30 < th dose independent rect. 16 4
116 234.23 atmosphere 1000.0 90 < th dose dependent rect. 17 4
118 234.24 wind 3.0 270 > th dose independent rect. 2 2
127 234.25 atmosphere 1000.0 10 < th dose dependent rect. 17 3
152 234.31 atmosphere 1000.0 10 < th dose dependent rect. 17 1
165 234.32 precipitation 0.1 1440 > th dose dependent rect. 4 13
189 234.38 precipitation 0.1 1440 < th dose independent rect. 13 23
191 234.38 precipitation 0.1 1440 < th dose dependent rect. 13 23
210 234.45 temperature 20.0 30 < th dose dependent rect. 24 23
221 234.49 precipitation 0.1 4320 > th dose independent rect. 19 1
227 234.50 precipitation 0.1 1440 < th dose independent rect. 6 23
230 234.50 precipitation 0.1 1440 < th dose dependent rect. 6 23
234 234.51 precipitation 0.1 1440 < th dose independent rect. 8 21
238 234.51 precipitation 0.1 1440 < th dose dependent rect. 8 21
240 234.52 precipitation 0.1 1440 < th dose independent rect. 6 11
244 234.52 precipitation 0.1 1440 > th dose independent rect. 15 23
246 234.52 precipitation 0.1 1440 < th dose independent rect. 19 23
247 234.52 precipitation 0.1 1440 < th dose dependent rect. 6 11
251 234.52 precipitation 0.1 1440 < th dose dependent rect. 19 23
254 234.53 precipitation 0.1 4320 > th dose dependent rect. 19 1
265 234.55 precipitation 0.1 1440 > th dose independent rect. 4 23
303 234.58 precipitation 0.1 1440 > th dose independent rect. 13 22
309 234.59 precipitation 0.1 1440 > th dose independent rect. 9 22
314 234.59 precipitation 0.1 1440 < th dose independent rect. 4 23
317 234.59 precipitation 0.1 1440 < th dose dependent rect. 4 23
326 234.61 precipitation 0.1 1440 > th dose independent rect. 19 23
329 234.62 precipitation 0.1 1440 > th dose independent no NA NA
330 234.62 precipitation 0.1 1440 < th dose independent no NA NA
332 234.62 precipitation 0.1 1440 > th dose independent rect. 9 20
343 234.62 precipitation 0.1 1440 < th dose independent rect. 16 23
344 234.62 precipitation 0.1 1440 < th dose dependent no NA NA
346 234.62 precipitation 0.1 1440 < th dose dependent rect. 16 23
359 234.64 precipitation 0.1 1440 > th dose independent rect. 2 23
394 234.68 precipitation 0.1 1440 > th dose independent rect. 13 18
402 234.69 precipitation 0.1 720 < th dose independent sin 12 NA
410 234.69 precipitation 0.1 720 < th dose dependent sin 12 NA
425 234.71 precipitation 0.1 1440 > th dose dependent rect. 23 21
429 234.72 precipitation 0.1 1440 < th dose independent rect. 13 18
435 234.72 precipitation 0.1 1440 < th dose dependent rect. 13 18
445 234.74 precipitation 0.1 1440 < th dose independent rect. 13 16
447 234.74 precipitation 0.1 1440 < th dose dependent rect. 13 16
495 234.81 precipitation 0.1 1440 > th dose dependent rect. 19 23
500 234.82 precipitation 0.1 1440 > th dose independent rect. 15 20
517 234.84 precipitation 0.1 1440 > th dose dependent no NA NA
521 234.84 precipitation 0.1 1440 > th dose dependent rect. 13 22
522 234.84 precipitation 0.1 1440 > th dose dependent rect. 9 23
525 234.84 precipitation 0.1 1440 > th dose dependent rect. 15 23
572 234.90 precipitation 0.1 1440 > th dose dependent rect. 7 7
585 234.92 precipitation 0.1 1440 > th dose dependent rect. 6 23
603 234.94 precipitation 0.1 1440 > th dose independent rect. 15 16
668 235.00 humidity 60.0 14400 < th dose independent rect. 16 1
686 235.01 precipitation 0.1 1440 > th dose dependent rect. 4 10
713 235.05 humidity 90.0 720 > th dose dependent rect. 8 14
736 235.07 precipitation 0.1 1440 > th dose independent rect. 6 8
824 235.18 precipitation 0.1 1440 > th dose independent sin 13 NA
865 235.22 precipitation 0.1 1440 < th dose independent rect. 7 7
871 235.22 precipitation 0.1 1440 < th dose dependent rect. 7 7
890 235.25 temperature 20.0 30 < th dose dependent sin 0 NA
901 235.27 humidity 60.0 14400 > th dose independent rect. 16 1
940 235.31 atmosphere 1010.0 1440 > th dose dependent rect. 2 1
959 235.33 humidity 90.0 720 > th dose dependent sin 22 NA
993 235.37 humidity 90.0 720 > th dose dependent rect. 4 18