BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0620300 Os07g0620300|AK119518
(451 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0620300 Clathrin adaptor complex, medium chain family ... 887 0.0
AK062296 564 e-161
Os01g0703600 Similar to Mu1 adaptin 265 7e-71
Os05g0543100 Similar to Clathrin coat assembly protein AP47... 259 3e-69
Os02g0690700 Clathrin adaptor complex, medium chain family ... 232 4e-61
Os05g0383100 Clathrin adaptor complex, medium chain family ... 141 9e-34
>Os07g0620300 Clathrin adaptor complex, medium chain family protein
Length = 451
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/451 (96%), Positives = 434/451 (96%)
Query: 1 MISQFFVLSQRGDHIVFRDYRGEVPKGSAEIFFRKVKFWNDDEAEEAPPVFNVDGVNYIH 60
MISQFFVLSQRGDHIVFRDYRGEVPKGSAEIFFRKVKFWNDDEAEEAPPVFNVDGVNYIH
Sbjct: 1 MISQFFVLSQRGDHIVFRDYRGEVPKGSAEIFFRKVKFWNDDEAEEAPPVFNVDGVNYIH 60
Query: 61 VKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNFILVYELLDEVID 120
VKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNFILVYELLDEVID
Sbjct: 61 VKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNFILVYELLDEVID 120
Query: 121 FGYPQTTSTEVLKSYIFNEPIMVDAGRLPPLGPAAMFMQGTKRMPGTAVTKSVVATEPGG 180
FGYPQTTSTEVLKSYIFNEPIMVDAGRLPPLGPAAMFMQGTKRMPGTAVTKSVVATEPGG
Sbjct: 121 FGYPQTTSTEVLKSYIFNEPIMVDAGRLPPLGPAAMFMQGTKRMPGTAVTKSVVATEPGG 180
Query: 181 KKREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIXXXXX 240
KKREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLSI
Sbjct: 181 KKREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGRTGS 240
Query: 241 XXXXXXXXXXXXAVILDDCNFHESVHLDSFDIDRTLHLIPPDGEFAVMNYRITQEFKPPF 300
AVILDDCNFHESVHLDSFDIDRTLHLIPPDGEFAVMNYRITQEFKPPF
Sbjct: 241 SSYDYRSSSGGGAVILDDCNFHESVHLDSFDIDRTLHLIPPDGEFAVMNYRITQEFKPPF 300
Query: 301 RVTALIEEAGPSRAEVLLKIRADFSANVTANTIVVQMPVPSYTMRASFELEAGAVGQTTD 360
RVTALIEEAGPSRAEVLLKIRADFSANVTANTIVVQMPVPSYTMRASFELEAGAVGQTTD
Sbjct: 301 RVTALIEEAGPSRAEVLLKIRADFSANVTANTIVVQMPVPSYTMRASFELEAGAVGQTTD 360
Query: 361 FKEGSRRIEWNLKKIVGGSEHTLRAKLTFSQESHGNLTKEAGPVNMNFTIPMYNTSKLQV 420
FKEGSRRIEWNLKKIVGGSEHTLRAKLTFSQESHGNLTKEAGPVNMNFTIPMYNTSKLQV
Sbjct: 361 FKEGSRRIEWNLKKIVGGSEHTLRAKLTFSQESHGNLTKEAGPVNMNFTIPMYNTSKLQV 420
Query: 421 RYLQIAKKSKTYNPYRWVRYVTQANSYVARL 451
RYLQIAKKSKTYNPYRWVRYVTQANSYVARL
Sbjct: 421 RYLQIAKKSKTYNPYRWVRYVTQANSYVARL 451
>AK062296
Length = 310
Score = 564 bits (1454), Expect = e-161, Method: Compositional matrix adjust.
Identities = 276/294 (93%), Positives = 277/294 (94%)
Query: 158 MQGTKRMPGTAVTKSVVATEPGGKKREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKS 217
+QGTKRMPGTAVTKSVVATEPGGKKREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKS
Sbjct: 17 LQGTKRMPGTAVTKSVVATEPGGKKREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKS 76
Query: 218 YLTGNPEIRLALNEDLSIXXXXXXXXXXXXXXXXXAVILDDCNFHESVHLDSFDIDRTLH 277
YLTGNPEIRLALNEDLSI AVILDDCNFHESVHLDSFDIDRTLH
Sbjct: 77 YLTGNPEIRLALNEDLSIGRTGSSSYDYRSSSGGGAVILDDCNFHESVHLDSFDIDRTLH 136
Query: 278 LIPPDGEFAVMNYRITQEFKPPFRVTALIEEAGPSRAEVLLKIRADFSANVTANTIVVQM 337
LIPPDGEFAVMNYRITQEFKPPFRVTALIEEAGPSRAEVLLKIRADFSANVTANTIVVQM
Sbjct: 137 LIPPDGEFAVMNYRITQEFKPPFRVTALIEEAGPSRAEVLLKIRADFSANVTANTIVVQM 196
Query: 338 PVPSYTMRASFELEAGAVGQTTDFKEGSRRIEWNLKKIVGGSEHTLRAKLTFSQESHGNL 397
PVPSYTMRASFELEAGAVGQTTDFKEGSRRIEWNLKKIVGGSEHTLRAKLTFSQESHGNL
Sbjct: 197 PVPSYTMRASFELEAGAVGQTTDFKEGSRRIEWNLKKIVGGSEHTLRAKLTFSQESHGNL 256
Query: 398 TKEAGPVNMNFTIPMYNTSKLQVRYLQIAKKSKTYNPYRWVRYVTQANSYVARL 451
TKEAGPVNMNFTIPMYNTSKLQVRYLQIAKKSKTYNPYRWVRYVTQANSYVARL
Sbjct: 257 TKEAGPVNMNFTIPMYNTSKLQVRYLQIAKKSKTYNPYRWVRYVTQANSYVARL 310
>Os01g0703600 Similar to Mu1 adaptin
Length = 429
Score = 265 bits (676), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 149/452 (32%), Positives = 242/452 (53%), Gaps = 30/452 (6%)
Query: 2 ISQFFVLSQRGDHIVFRDYRGEVPKGSAEIFFRKVKFWNDDEAEEAPPVFNVDGVNYIHV 61
+S F+L +G +V+RDYRG+V AE FF K+ D +P V++ GV Y+ +
Sbjct: 5 VSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKEGDSEAHSPVVYDDAGVTYMFI 64
Query: 62 KVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNFILVYELLDEVIDF 121
+ +F + + N + + +L L R+ V K Y L E+SLR NF++VYELLDE++DF
Sbjct: 65 QHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDF 124
Query: 122 GYPQTTSTEVLKSYIFNEPIMVDAGRLPPLGPAAMFMQGTKRMPGTAVTKSVVATEPGGK 181
GYPQ T ++L +I + ++ + PP+ AVT +V G +
Sbjct: 125 GYPQYTEAKILSEFIKTDAYRMEVSQRPPM----------------AVTNAVSWRSEGIR 168
Query: 182 -KREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIXXXXX 240
K+ E+F+D++E +++ +S+G I+ S++ G ++M++YL+G PE +L LN+ + +
Sbjct: 169 YKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLL----- 223
Query: 241 XXXXXXXXXXXXAVILDDCNFHESVHLDSFDIDRTLHLIPPDGEFAVMNYRITQEFKPPF 300
A+ LDD FH+ V L F+ DRT+ IPPDG F +M YR++ + KP
Sbjct: 224 --EAQGRATKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLI 281
Query: 301 RVTALIEEAGPSRAEVLLKIRADFSANVTANTIVVQMPVPSYTMRASFELEAGAVGQTTD 360
V A IE+ SR E+++K R+ F TA + +++PVPS + G+
Sbjct: 282 WVEAQIEKHSRSRIELMVKARSQFKERSTATNVEIEVPVPSDATNPNIRTSMGSAA---- 337
Query: 361 FKEGSRRIEWNLKKIVGGSEHTLRAKLTF-SQESHGNLTKEAGPVNMNFTIPMYNTSKLQ 419
+ + W +K GG ++ RA+ + S + ++ P+ + F IP + S +Q
Sbjct: 338 YAPERDAMVWKVKSFPGGKDYMCRAEFSLPSITAEEAAPEKKAPIRVKFEIPYFTVSGIQ 397
Query: 420 VRYLQIAKKSKTYNPYRWVRYVTQANSYVARL 451
VRYL+I +KS Y WVRY+T A Y RL
Sbjct: 398 VRYLKIIEKS-GYQALPWVRYITMAGEYELRL 428
>Os05g0543100 Similar to Clathrin coat assembly protein AP47 (Clathrin coat
associated protein AP47) (Golgi adaptor AP-1 47 kDa
protein) (HA1 47 kDa subunit) (Clathrin assembly protein
assembly protein complex 1 medium chain) (Uncoordinated
protein 101)
Length = 430
Score = 259 bits (662), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 153/452 (33%), Positives = 245/452 (54%), Gaps = 30/452 (6%)
Query: 2 ISQFFVLSQRGDHIVFRDYRGEVPKGSAEIFFRKVKFWNDDEAEEAPPVFNVDGVNYIHV 61
+S F+L +G +V+RDYRG+V AE FF K+ D +P V + GV+Y+ +
Sbjct: 6 VSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKESDAEVLSPVVHDDAGVSYMFI 65
Query: 62 KVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNFILVYELLDEVIDF 121
+ +F + + N + + +L L R+ V K Y L E+SLR NF++VYELLDE++DF
Sbjct: 66 QHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDF 125
Query: 122 GYPQTTSTEVLKSYIFNEPIMVDAGRLPPLGPAAMFMQGTKRMPGTAVTKSVVATEPGGK 181
GYPQ T ++ I +E I DA R M+ T+R P AVT +V G +
Sbjct: 126 GYPQYT-----EAMILSEFIKTDAYR----------MEVTQR-PPMAVTNAVSWRSEGIR 169
Query: 182 -KREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIXXXXX 240
K+ E+F+D++E +++ +S+G I+ S++ G ++M+++L+G PE +L LN+ + +
Sbjct: 170 YKKNEVFLDVVESVNILVNSNGQIVRSDVIGELKMRTFLSGMPECKLGLNDRVLL----- 224
Query: 241 XXXXXXXXXXXXAVILDDCNFHESVHLDSFDIDRTLHLIPPDGEFAVMNYRITQEFKPPF 300
A+ LDD FH+ V L F+ DRT+ IPPDG F +M YR++ + KP
Sbjct: 225 --EAQGRTTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLI 282
Query: 301 RVTALIEEAGPSRAEVLLKIRADFSANVTANTIVVQMPVPSYTMRASFELEAGAVGQTTD 360
V A +E+ SR ++ +K R+ F TA + +++PVP + + G+
Sbjct: 283 WVEAQVEKHSRSRIQITVKTRSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAA---- 338
Query: 361 FKEGSRRIEWNLKKIVGGSEHTLRAKLTF-SQESHGNLTKEAGPVNMNFTIPMYNTSKLQ 419
+ + W +K GG E+ RA+ + S S + ++ P+ + F IP + S +Q
Sbjct: 339 YAPERDAMVWKIKSFPGGKEYMCRAEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQ 398
Query: 420 VRYLQIAKKSKTYNPYRWVRYVTQANSYVARL 451
VRYL+I +KS Y WVRY+T A Y RL
Sbjct: 399 VRYLKIIEKS-GYQALPWVRYITMAGEYELRL 429
>Os02g0690700 Clathrin adaptor complex, medium chain family protein
Length = 438
Score = 232 bits (592), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/450 (31%), Positives = 238/450 (52%), Gaps = 18/450 (4%)
Query: 3 SQFFVLSQRGDHIVFRDYRGEVPKGSAEIFFRKVKFWNDDEAEEAPPVFNVDGVNYIHVK 62
S + L+ RGD ++ R YR +V + F ++ E P V + G ++++++
Sbjct: 6 SAIYFLNLRGDVLINRLYRDDVGGNMVDAF--RMHIMQTKELGTCP-VRQIGGCSFLYMR 62
Query: 63 VAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLG-VLNEDSLRKNFILVYELLDEVIDF 121
++ ++ V+ N + + + + + K Y G +ED++R NF+L+YELLDE++DF
Sbjct: 63 ISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDF 122
Query: 122 GYPQTTSTEVLKSYIFNEPIMVDAGRLPPLGPAAMFMQGTKRMPGTAVTKSVVATEPGGK 181
GYPQ S E+LK YI E + P P T ++ G + E
Sbjct: 123 GYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVP---NATLQVTGAVGWRR----EGLMY 175
Query: 182 KREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIXXXXXX 241
K+ E+F+DI+E +++ SS G +L ++ G I MK +L+G P+++L LN+ + +
Sbjct: 176 KKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKEAQL 235
Query: 242 XXXXXXXXXXXAVILDDCNFHESVHLDSFDIDRTLHLIPPDGEFAVMNYRITQEFKPPFR 301
+ LDD FH+ V+L F+ ++T+ +PPDGEF +M YRIT+ PFR
Sbjct: 236 KSRPAKSGK--TIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFR 293
Query: 302 VTALIEEAGPSRAEVLLKIRADFSANVTANTIVVQMPVPSYTMRASFELEAGAVGQTTDF 361
V I+E G +R E+ +K+++ F A + A +VV++PVP T + SF+ +G +
Sbjct: 294 VLPTIKELGRTRMEINVKVKSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGK----AKY 349
Query: 362 KEGSRRIEWNLKKIVGGSEHTLRAKLTFSQESHGNLTKEAGPVNMNFTIPMYNTSKLQVR 421
+ W ++K G +E T+ A++ + P+ M F +PM+ S L+VR
Sbjct: 350 NASIDSLVWKIRKFPGQTEATMSAEVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVR 409
Query: 422 YLQIAKKSKTYNPYRWVRYVTQANSYVARL 451
+L++ +KS YN WVRY+T+A SY R
Sbjct: 410 FLKVWEKS-GYNTVEWVRYITRAGSYEIRC 438
>Os05g0383100 Clathrin adaptor complex, medium chain family protein
Length = 417
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 126/466 (27%), Positives = 202/466 (43%), Gaps = 66/466 (14%)
Query: 1 MISQFFVLSQRGDHIVFRDYRGE-VPKGSAEIFFRKVKFWNDDEAEEAPPVFNVDGVNYI 59
M+ F+LS G+ +V + V +G F+ V +A + V V +Y+
Sbjct: 1 MLQCVFLLSDSGEVMVEKQMTAHRVDRGICGWFWDYVLAHAAGDASKVLQVV-VSPTHYL 59
Query: 60 -HVKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNFILVYELLDEV 118
V G+ F+ T V + P L +E L R+A V DYLG LNED ++ NF+LVY++LDE+
Sbjct: 60 FQVYRNGVTFLACTQVEMPPLLAIEFLSRVADVLTDYLGDLNEDIIKDNFVLVYQILDEM 119
Query: 119 IDFGYPQTTSTEVLKSY-----IFNEPIMVDAGRLPPLGPAAMFMQGTKRMPGTAVTKSV 173
+D G+P TT +LK I ++ + V G+ LG ++P A +
Sbjct: 120 MDNGFPLTTEPNILKEMIAPPNIVSKMLNVVTGKSSNLG---------NKLPDAAASFVP 170
Query: 174 VATEPGGKKREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDL 233
T E++V+I+E + + G ++ E G IQ+ S L G PE+ L+ +
Sbjct: 171 WRTTVVKDASNEVYVNIVEELDACVNREGALVKCEAYGKIQVNSSLPGVPELTLSFSN-- 228
Query: 234 SIXXXXXXXXXXXXXXXXXAVILDDCNFHESVHLDSFDIDRTLHLIPPDGEFAVMNYRIT 293
I++D FH V ++ ++ L +PPDG+F +M+YR+
Sbjct: 229 -------------------PTIINDVRFHPCVRFRPWESNQILSFVPPDGQFELMSYRVK 269
Query: 294 QEFKPPFRVT-ALIEEAGPSRAEVLLKIRADFSANVTANTIVVQMPVPSYTMRASFELEA 352
+ P V L ++G R V++ I+ D T ++I VQ +P A
Sbjct: 270 KLKTTPIYVKPQLTSDSGNCRVNVMVGIKND--PGKTIDSITVQFRLPPLIASADLTANY 327
Query: 353 GAVGQTTDFKEGSRRIEWNLKKIVGGSEHTLRAKLTFSQESHGNLTKEAGPVNMN----- 407
G V D + W + +I +L GNL E G +++
Sbjct: 328 GTVDILAD-----QTCFWTIGQIPKDKAPSL----------SGNLRLEEGLTHLHTFPTF 372
Query: 408 ---FTIPMYNTSKLQVRYLQIAKKSKTYNPYRWVRYVTQANSYVAR 450
F I S LQ+ L++ K+ PY+ R TQA Y R
Sbjct: 373 EVKFKIMGVALSGLQIDKLEV--KNTPNAPYKGFRAQTQAGRYEVR 416
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,096,931
Number of extensions: 549673
Number of successful extensions: 1065
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1047
Number of HSP's successfully gapped: 6
Length of query: 451
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 347
Effective length of database: 11,605,545
Effective search space: 4027124115
Effective search space used: 4027124115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)