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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0620300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Clathrin adaptor complex, medium chain family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0235) R2 : 0.00165
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.043 (0.0495) R2dN8 : 0.00213 R2N8 : 0.00165
σ : 0.442
deviance : 89.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.69 0.403 10.3 0.109 0.464 -0.407 -0.134 0.843 0.124 3.73 25.5 1429 -- --
74.52 0.402 10.3 -0.144 0.471 -0.346 -0.0947 -- 0.04 3.81 24.7 1430 -- --
73.74 0.4 10.3 0.109 0.464 -0.407 -- 0.833 0.124 3.74 25.5 1428 -- --
74.54 0.402 10.3 -0.103 0.5 -0.367 -- -- 0.0753 3.81 25.4 1409 -- --
76.98 0.411 10.3 -0.122 -- -0.341 -- 0.206 0.0848 -- 25.5 1428 -- --
78.05 0.414 10.3 -0.262 0.431 -- -0.0979 -- -0.0819 3.82 -- -- -- --
78.08 0.414 10.3 -0.26 0.43 -- -- -- -0.0813 3.82 -- -- -- --
76.28 0.409 10.3 -0.17 -- -0.339 -- -- 0.0265 -- 25.78 1753 -- --
74.89 0.403 10.3 -- 0.455 -0.382 -- -- 0.0688 3.74 25.37 1459 -- --
88.28 0.439 10.3 -0.242 -- -- -- -- -0.0699 -- -- -- -- --
79.86 0.418 10.3 -- 0.425 -- -- -- -0.0524 3.83 -- -- -- --
77.04 0.41 10.3 -- -- -0.349 -- -- 0.0478 -- 25.75 1753 -- --
89.83 0.442 10.3 -- -- -- -- -- -0.043 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.45 temperature 25.0 30 > th dose dependent rect. 6 1
3 61.82 radiation 10.0 30 < th dose independent rect. 6 1
4 61.87 atmosphere 1010.0 30 < th dose independent rect. 6 1
8 64.12 atmosphere 1010.0 30 < th dose dependent rect. 6 1
13 65.42 wind 1.0 30 > th dose dependent rect. 6 1
16 66.09 humidity 90.0 30 < th dose dependent rect. 6 1
17 66.14 wind 3.0 30 > th dose independent rect. 6 1
19 67.23 temperature 25.0 90 > th dose independent rect. 5 2
23 67.52 radiation 20.0 30 < th dose dependent rect. 6 1
25 67.59 radiation 1.0 10 > th dose dependent rect. 6 1
36 68.44 temperature 25.0 1440 > th dose dependent rect. 5 2
56 69.22 atmosphere 1005.0 30 > th dose independent rect. 6 1
57 69.26 humidity 90.0 30 < th dose independent rect. 6 1
58 69.27 radiation 1.0 30 > th dose independent rect. 6 1
59 69.29 wind 1.0 30 < th dose independent rect. 6 1
61 69.33 wind 5.0 30 < th dose independent rect. 6 1
64 69.33 temperature 10.0 30 > th dose independent rect. 6 1
66 69.33 temperature 30.0 30 < th dose independent rect. 6 1
67 69.33 humidity 50.0 30 > th dose independent rect. 6 1
70 69.33 atmosphere 995.0 30 > th dose independent rect. 6 1
75 69.33 precipitation 0.1 30 < th dose independent rect. 6 1
76 69.33 temperature 10.0 30 > th dose independent rect. 7 23
77 69.33 precipitation 0.1 30 < th dose dependent rect. 6 1
79 69.34 wind 9.0 1440 < th dose independent rect. 7 1
80 69.34 temperature 10.0 1440 > th dose independent rect. 7 1
84 69.34 temperature 30.0 1440 < th dose independent rect. 7 1
88 69.34 humidity 50.0 1440 > th dose independent rect. 7 1
94 69.34 atmosphere 995.0 1440 > th dose independent rect. 7 1
95 69.34 atmosphere 1015.0 1440 < th dose independent rect. 7 1
96 69.34 temperature 10.0 1440 > th dose independent rect. 8 23
109 69.55 temperature 25.0 1440 < th dose independent rect. 5 1
122 69.85 humidity 50.0 30 > th dose dependent rect. 6 1
129 69.97 wind 9.0 30 < th dose dependent rect. 6 1
161 70.40 atmosphere 995.0 30 > th dose dependent rect. 6 1
176 70.82 temperature 25.0 720 > th dose dependent rect. 22 10
192 71.17 wind 9.0 30 < th dose independent rect. 7 23
218 71.55 temperature 25.0 720 > th dose independent rect. 20 13
229 71.66 temperature 25.0 720 > th dose independent sin 9 NA
235 71.71 temperature 25.0 720 > th dose independent rect. 22 10
266 72.06 temperature 25.0 1440 < th dose independent rect. 20 11
274 72.11 atmosphere 995.0 30 > th dose independent rect. 7 23
280 72.15 temperature 30.0 30 < th dose dependent rect. 6 1
304 72.28 precipitation 0.1 30 < th dose independent rect. 7 23
305 72.28 precipitation 0.1 30 < th dose dependent rect. 7 23
358 72.54 radiation 1.0 1440 > th dose independent rect. 11 2
373 72.59 radiation 1.0 1440 < th dose independent rect. 11 2
377 72.59 radiation 1.0 1440 < th dose dependent rect. 11 2
381 72.62 temperature 25.0 1440 < th dose independent sin 10 NA
418 72.73 temperature 25.0 10 > th dose dependent rect. 17 14
487 72.96 temperature 25.0 1440 > th dose independent rect. 20 6
522 73.04 temperature 25.0 1440 < th dose independent rect. 20 6
528 73.05 temperature 25.0 1440 > th dose dependent rect. 20 6
550 73.11 temperature 25.0 1440 > th dose dependent rect. 21 4
666 73.30 temperature 25.0 10 > th dose dependent sin 10 NA
697 73.35 temperature 25.0 30 > th dose independent rect. 5 14
711 73.37 temperature 25.0 1440 > th dose dependent sin 10 NA
764 73.48 wind 7.0 4320 < th dose independent rect. 17 1
813 73.54 temperature 25.0 90 > th dose independent rect. 24 19
941 73.71 wind 7.0 4320 > th dose independent rect. 17 1
987 73.76 wind 7.0 43200 < th dose independent rect. 17 1